View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18866_low_20 (Length: 213)

Name: NF18866_low_20
Description: NF18866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18866_low_20
NF18866_low_20
[»] chr2 (2 HSPs)
chr2 (15-196)||(7019779-7019960)
chr2 (137-183)||(18055589-18055636)
[»] chr8 (1 HSPs)
chr8 (137-183)||(33640148-33640195)
[»] chr1 (2 HSPs)
chr1 (137-183)||(4605761-4605808)
chr1 (138-183)||(50880338-50880384)
[»] chr4 (2 HSPs)
chr4 (141-183)||(19134709-19134752)
chr4 (133-165)||(53654794-53654826)
[»] chr3 (2 HSPs)
chr3 (137-179)||(11038498-11038541)
chr3 (15-53)||(30290589-30290627)


Alignment Details
Target: chr2 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 15 - 196
Target Start/End: Complemental strand, 7019960 - 7019779
Alignment:
Q  15 aaaatatgatggaagaagagcataattcttaattttgtaaaggttttagacaaaaatccaaaatgtccaatagtgtggcactgattcattcaatgaaact 114  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7019960 aaaacatgatgaaagaagagcataattcttaattttgtaaaggttttagacaaaaatccaaaatgtccaatggtgtggcactgattcattcaatgaaact 7019861  T
Q  115 agcaaaactacattatggaagtagagaaatgatatttgaacatctcttttacaacaatattttgacaactagatgtatatag 196  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7019860 agcaaaactacattatggaagtagagaaatgatatttgaacatatcttttacaacaatattttgacaactagatgtatatag 7019779  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 18055589 - 18055636
Alignment:
Q  137 agagaaatgatatttgaacatctcttttacaacaa-tattttgacaac 183  Q
    |||||||||||||||||||||||||||| |||||| |||||| |||||    
T  18055589 agagaaatgatatttgaacatctcttttgcaacaactattttaacaac 18055636  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 33640148 - 33640195
Alignment:
Q  137 agagaaatgatatttgaacatctcttttacaacaa-tattttgacaac 183  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||    
T  33640148 agagaaatgatatttgaacatctcttttgcaacaactattttgacaac 33640195  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 4605808 - 4605761
Alignment:
Q  137 agagaaatgatatttgaacatctcttttacaacaa-tattttgacaac 183  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||    
T  4605808 agagaaatgatatttgaacatctcttttgcaacaactattttgacaac 4605761  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 138 - 183
Target Start/End: Complemental strand, 50880384 - 50880338
Alignment:
Q  138 gagaaatgatatttgaacatctcttttacaacaa-tattttgacaac 183  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||    
T  50880384 gagaaatgatatttgaacatctcttttgcaacaattattttgacaac 50880338  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 183
Target Start/End: Original strand, 19134709 - 19134752
Alignment:
Q  141 aaatgatatttgaacatctcttttacaacaa-tattttgacaac 183  Q
    |||||||||||||||||||||||| |||||| ||||||||||||    
T  19134709 aaatgatatttgaacatctcttttgcaacaactattttgacaac 19134752  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 165
Target Start/End: Complemental strand, 53654826 - 53654794
Alignment:
Q  133 aagtagagaaatgatatttgaacatctctttta 165  Q
    ||||||||||||||||||||||||||| |||||    
T  53654826 aagtagagaaatgatatttgaacatctatttta 53654794  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 179
Target Start/End: Original strand, 11038498 - 11038541
Alignment:
Q  137 agagaaatgatatttgaacatctcttttacaacaa-tattttga 179  Q
    |||||||||||||||||||||||||||| |||||| ||||||||    
T  11038498 agagaaatgatatttgaacatctcttttgcaacaactattttga 11038541  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 30290589 - 30290627
Alignment:
Q  15 aaaatatgatggaagaagagcataattcttaattttgta 53  Q
    ||||| ||||||||||||||||||||||||| |||||||    
T  30290589 aaaatgtgatggaagaagagcataattcttagttttgta 30290627  T

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