View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18866_low_3 (Length: 460)
Name: NF18866_low_3
Description: NF18866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18866_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 17 - 450
Target Start/End: Complemental strand, 46550273 - 46549855
Alignment:
| Q |
17 |
agacagcttccaaagtatctattgagtgtattgtttgtttctttctgcttccttttcttacgttgtttttggttcttatttgtatgcatgcatgcatgca |
116 |
Q |
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| T |
46550273 |
agacagcttccaa-gtatctattgagtgtattgtttgtttctttctgcttccgtttcttacgttgtttttggttcttatttgtatgcatgcatgcat--- |
46550178 |
T |
|
| Q |
117 |
tatccaatagaaaaatacgtgtcttgttttaataccctttatttatggctttatgattgcacaacgacgatggcagcttttgcagaatatatgaatgttt |
216 |
Q |
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| T |
46550177 |
-atccaatagaaaaa-acgtgtcttgttttaatac----------tggctttatgattgcaccacgacgatggcagcttttgcagaatatatgaatgttt |
46550090 |
T |
|
| Q |
217 |
tt-attgtgaaagcttgctgacttggtcaaaattaggtcaagtttaggagtattaattatgtattgtcattgaatggnnnnnnnnatgattcgattcaaa |
315 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
46550089 |
tttattgtgaaagcttgctgacttggtcaaaattaggtcaagtttaggagtattaattatgtattgtcattgaatggttttttttatgattcgattcaaa |
46549990 |
T |
|
| Q |
316 |
actacgtcctgcttaactaaaagtcaaataccgagaacagcaattcatgcaaatttgaggcatgaatattcaccaccctccatagcaaaatatttattac |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
46549989 |
actacgtcctgcttaactaaaagtcaaataccgagaacagcaattcatgcaaatatgaggcatgaatatttaccacccaccatagcaaaatatttattac |
46549890 |
T |
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| Q |
416 |
ctacttgctgtaacacataaacttcatcccctatg |
450 |
Q |
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|||||||||||||||| ||||| ||||||| |||| |
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| T |
46549889 |
ctacttgctgtaacacctaaacatcatcccttatg |
46549855 |
T |
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