View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18866_low_7 (Length: 310)

Name: NF18866_low_7
Description: NF18866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18866_low_7
NF18866_low_7
[»] chr6 (3 HSPs)
chr6 (2-297)||(9193889-9194184)
chr6 (17-52)||(9092031-9092066)
chr6 (38-139)||(430984-431085)
[»] chr3 (2 HSPs)
chr3 (22-142)||(24830137-24830257)
chr3 (34-139)||(36060268-36060376)
[»] chr5 (2 HSPs)
chr5 (104-147)||(14366166-14366209)
chr5 (38-180)||(39821648-39821790)
[»] chr4 (1 HSPs)
chr4 (22-109)||(39032501-39032588)
[»] chr1 (2 HSPs)
chr1 (35-108)||(6025924-6025997)
chr1 (96-153)||(17209196-17209253)
[»] chr8 (1 HSPs)
chr8 (89-157)||(16950240-16950308)
[»] chr7 (1 HSPs)
chr7 (89-157)||(6894319-6894387)


Alignment Details
Target: chr6 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 2 - 297
Target Start/End: Original strand, 9193889 - 9194184
Alignment:
Q  2 catcaccaatcatagatcgtggaaaacaacaatttgttcaaattctgctactgaacagtactatagagccgatatagccactattgaacaacattttgta 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9193889 catcaccaatcatagatcgtggaaaacaacaatttgttcaaattctgctactgaacagtactatagagccgatatagccactattgaacaacattttgta 9193988  T
Q  102 ccaaataatgtattgtggaagaacagtgatttgttcaacttccactacgctatagctcaatagttgctatttaacaacatcggaaacaccacattctaaa 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  9193989 ccaaataatgtattgtggaagaacagtgatttgttcaacttccactacgctatagctcaatagttgctatttaacaacattggaaacaccacattctaaa 9194088  T
Q  202 ctactgatataattatgtttgacaacgatgaaaaacaatagtaaggagaaagatggaatattcaactcattctaagcaagcagaaccggaatatag 297  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9194089 ctactgatataattatgcttgacaacgatgaaaaacgatagtaaggagaaagatggaatattcaactcattctaagcaagcagaacctgaatatag 9194184  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 9092031 - 9092066
Alignment:
Q  17 atcgtggaaaacaacaatttgttcaaattctgctac 52  Q
    ||||||||||| ||||||||||||||||||||||||    
T  9092031 atcgtggaaaataacaatttgttcaaattctgctac 9092066  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 139
Target Start/End: Complemental strand, 431085 - 430984
Alignment:
Q  38 ttcaaattctgctactgaacagtactatagagccgatatagccactattgaacaacattttgtaccaaataatgtattgtggaagaacagtgatttgttc 137  Q
    |||||||||||||||  |||||| |||||| ||   ||||||| ||||| ||||| ||||||||| || || | |||  ||||| || ||||||||||||    
T  431085 ttcaaattctgctacgcaacagtgctatagcgcatctatagccgctatttaacaatattttgtactaagtagtttataatggaacaatagtgatttgttc 430986  T
Q  138 aa 139  Q
    ||    
T  430985 aa 430984  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 24830257 - 24830137
Alignment:
Q  22 ggaaaacaacaatttgttcaaattctgctactgaacagtactatagagccgatatagccactattgaacaacattttgtaccaaataatgtattgtggaa 121  Q
    ||||||||||| |||||||||||| ||||||  || ||| |||||| ||||||||||||  ||||  |||||||||| ||| ||||| |||||||| |||    
T  24830257 ggaaaacaacagtttgttcaaattttgctacacaagagtgctatagcgccgatatagcctttatttgacaacattttatactaaatagtgtattgtagaa 24830158  T
Q  122 gaacagtgatttgttcaactt 142  Q
     || || ||||| ||||||||    
T  24830157 caatagcgattttttcaactt 24830137  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 139
Target Start/End: Complemental strand, 36060376 - 36060268
Alignment:
Q  34 tttgttcaaattctgctactgaacagtactatagagccgatatagccac---tattgaacaacattttgtaccaaataatgtattgtggaagaacagtga 130  Q
    |||||||||||| |||||   ||||||||||||| ||| |||||||| |   ||||  |||| ||||||||| |||||| ||||||||||| ||  | ||    
T  36060376 tttgttcaaattttgctatgcaacagtactatagcgcctatatagccgcctctatttcacaatattttgtactaaataacgtattgtggaacaaatgcga 36060277  T
Q  131 tttgttcaa 139  Q
    |||||||||    
T  36060276 tttgttcaa 36060268  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 147
Target Start/End: Complemental strand, 14366209 - 14366166
Alignment:
Q  104 aaataatgtattgtggaagaacagtgatttgttcaacttccact 147  Q
    |||||||||||||||||| ||  |||||||||||||||||||||    
T  14366209 aaataatgtattgtggaacaatggtgatttgttcaacttccact 14366166  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 180
Target Start/End: Original strand, 39821648 - 39821790
Alignment:
Q  38 ttcaaattctgctactgaacagtactatagagccgatatagccactattgaacaacattttgtaccaaataatgtattgtggaagaacagtgatttgttc 137  Q
    |||||||||||||||  |||| | |||||| || |  ||||||  ||||  |||| ||||| |||  || |||||||||||||| || |||||| |||||    
T  39821648 ttcaaattctgctacacaacaatgctatagtgctgtaatagccgttattagacaatattttatacttaacaatgtattgtggaataatagtgatctgttc 39821747  T
Q  138 aacttccactacgctatagctcaatagttgctatttaacaaca 180  Q
    || |||| ||| |||||||||| |||    |||||||||||||    
T  39821748 aaattccgctaagctatagctctataaccactatttaacaaca 39821790  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 109
Target Start/End: Original strand, 39032501 - 39032588
Alignment:
Q  22 ggaaaacaacaatttgttcaaattctgctactgaacagtactatagagccgatatagccactattgaacaacattttgtaccaaataa 109  Q
    |||||| |||| |||||| ||||||||||||  || ||| |||||| |||  | |||||| ||||  |||||||||||||||||||||    
T  39032501 ggaaaataacagtttgttgaaattctgctacgcaatagtgctatagcgcccctgtagccattattcgacaacattttgtaccaaataa 39032588  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 108
Target Start/End: Original strand, 6025924 - 6025997
Alignment:
Q  35 ttgttcaaattctgctactgaacagtactatagagccgatatagccactattgaacaacattttgtaccaaata 108  Q
    ||||| |||||||||| |  |||||| |||||| || | |||||||||||||  |||||||||||||| |||||    
T  6025924 ttgttaaaattctgctgcccaacagtgctatagcgctgctatagccactatttgacaacattttgtactaaata 6025997  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 153
Target Start/End: Complemental strand, 17209253 - 17209196
Alignment:
Q  96 tttgtaccaaataatgtattgtggaagaacagtgatttgttcaacttccactacgcta 153  Q
    ||||||| ||||||||||| || ||| || ||||||||||||||  ||||||||||||    
T  17209253 tttgtactaaataatgtatagtagaacaatagtgatttgttcaaaatccactacgcta 17209196  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 157
Target Start/End: Complemental strand, 16950308 - 16950240
Alignment:
Q  89 acaacattttgtaccaaataatgtattgtggaagaacagtgatttgttcaacttccactacgctatagc 157  Q
    |||||||||||||| ||||||||||| |||||| ||   | |||||||||| |||  ||||||||||||    
T  16950308 acaacattttgtactaaataatgtatcgtggaacaaagataatttgttcaaattctgctacgctatagc 16950240  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 157
Target Start/End: Original strand, 6894319 - 6894387
Alignment:
Q  89 acaacattttgtaccaaataatgtattgtggaagaacagtgatttgttcaacttccactacgctatagc 157  Q
    ||||||||||||||  |||| ||||||||  || || ||  |||||||||| |||||||||||||||||    
T  6894319 acaacattttgtacttaatagtgtattgttaaacaatagcaatttgttcaaattccactacgctatagc 6894387  T

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