View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18866_low_9 (Length: 283)
Name: NF18866_low_9
Description: NF18866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18866_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 11 - 218
Target Start/End: Complemental strand, 31643618 - 31643410
Alignment:
| Q |
11 |
aatttgtttcatagaaggttgcatgaaattgtggatacagctaataaataagtgtccaattgctaaagagactagaattaactttagctgttttctgaat |
110 |
Q |
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| T |
31643618 |
aatttgtttcatggaaggttgcatgaaattgtggatacagctaataaataagtgtccaattgctaaagagactataattaactttagctgttttctgaat |
31643519 |
T |
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| Q |
111 |
cctaaaaaaggccaaatgaatgtgcggcagttaacaacaaaagaaaacacaatccacacaccttttgtttttatcta-actactgtattatctgtgactc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
31643518 |
cctaaaaaaggccaaatgaatgtgcggcagttaacaacaaaagaaaacacaatccacacaccttttgtttctatctactatactgtattatctgtgactc |
31643419 |
T |
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| Q |
210 |
aatagcaat |
218 |
Q |
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| T |
31643418 |
aatagcaat |
31643410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 2358869 - 2358811
Alignment:
| Q |
159 |
acaatccacacaccttttgtttttatctaactactgtattatctgtgactcaatagcaat |
218 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2358869 |
acaagccacacaccttttgtttttatcta-ctactgtattatctgtgactcaatagcaat |
2358811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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