View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18867_low_1 (Length: 436)
Name: NF18867_low_1
Description: NF18867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18867_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 72 - 422
Target Start/End: Complemental strand, 5525624 - 5525273
Alignment:
| Q |
72 |
tacataacaa-tccgatcatccaagagtccatttccagaccttgaacctcacatccaccgcacacttctcatctgccgtcgtcactttctcgccggcgac |
170 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5525624 |
tacataacaaatccgatcatccaagagtccatttccagaccttgaacctcacatccaccgcacacttctcatccgccgtcgtcactttctcgccggcgac |
5525525 |
T |
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| Q |
171 |
atcgataccgtcacaaagcacattgattccaacacgtggagtcttgaaaacccacatcttagcctccaccttagtctccatcttcatcttcaactccaat |
270 |
Q |
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|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5525524 |
atcgataccgtcacaaagcacatttattccaacatgtggagtcttgaaaacccacatcttagcctccaccttagtctccatcttcatcttcaactccaat |
5525425 |
T |
|
| Q |
271 |
gacttcctcttcacactctttctctcaaccaaagctttcaacattgtagtattcttcgttccatgctcaaacgacggaataacaccgtcaccaacgtcga |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5525424 |
gacttcctcttcacactctttctctcaaccaaagctttcaacatcgtagtattcttcgttccatgctcaaacgacggaataacaccgtcaccaacgtcga |
5525325 |
T |
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| Q |
371 |
gttcaccggatagaagagaaacggagattggttggtaagaaaatgttatttt |
422 |
Q |
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||||||||| |||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
5525324 |
gttcaccggctagaagagaaactgagatgggttggtaagaaaatgttatttt |
5525273 |
T |
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