View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18868_high_11 (Length: 299)
Name: NF18868_high_11
Description: NF18868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18868_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 17 - 283
Target Start/End: Original strand, 17391278 - 17391544
Alignment:
| Q |
17 |
tagggtctgtacgttataattattatattataggttgaggaataagcttttcccattttgtaaggctgattggacggaactaaagctttactaacagaaa |
116 |
Q |
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| T |
17391278 |
tagggtctgtacgttataattattatattataggttgaggaataagcttttcccattttgtaaggctgattggacggaactaaagctt-actaacagaaa |
17391376 |
T |
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| Q |
117 |
tagcatttttctttccttcttattctgcaaggctcttatttgattttctcttcaaataccttcttcacagcatccacaattttaacctattctacctcac |
216 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17391377 |
tagcatttttctttgcttcttattctgcaaggctcttatttgattttctcttcaaataccttcttcacagcatccacaattttaacctattctacctcac |
17391476 |
T |
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| Q |
217 |
ctcaataga-tgcttgttatccgaagaagccattccatgaaaaataaaagtggtaagaggaaaagatt |
283 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17391477 |
ctcaatagattgcttgttatccgaagaagccattccatgaaaaataaaagtggtaagaggaaaagatt |
17391544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 104 - 279
Target Start/End: Original strand, 17376223 - 17376398
Alignment:
| Q |
104 |
ttactaacagaaatagcatttttctttccttcttattctgcaaggctcttatttgattttctcttcaaataccttcttcacagcatccacaattttaacc |
203 |
Q |
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|||||||||||||||| | | ||| ||||||||||||| | | ||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
17376223 |
ttactaacagaaatagtgtatatctctccttcttattctatagcgttcttatttgattttctcttcaaaaaccttct-cacagcatccacaattttaacc |
17376321 |
T |
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| Q |
204 |
tattctacctcacctcaataga-tgcttgttatccgaagaagccattccatgaaaaataaaagtggtaagaggaaaa |
279 |
Q |
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|||| |||||||| ||||| | ||||||| || ||||||||||||||||| | ||| ||| | |||||||||||| |
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| T |
17376322 |
aattcaacctcaccacaataaattgcttgtcatgtgaagaagccattccatggagaatgaaaatagtaagaggaaaa |
17376398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 107 - 213
Target Start/End: Complemental strand, 26054454 - 26054351
Alignment:
| Q |
107 |
ctaacagaaatagcatttttctttccttcttattctgcaaggctcttatttgattttctcttcaaataccttcttcacagcatccacaattttaacctat |
206 |
Q |
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|||||||||||||| ||||||| ||||| ||||| ||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
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| T |
26054454 |
ctaacagaaatagcgtttttctctcctt---attctacaacgttcttatttgattttctcttcaaaaaccttcttcacagcatccacaattttaaccaat |
26054358 |
T |
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| Q |
207 |
tctacct |
213 |
Q |
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|| |||| |
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| T |
26054357 |
tcaacct |
26054351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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