View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18868_high_16 (Length: 252)
Name: NF18868_high_16
Description: NF18868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18868_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 23257828 - 23257608
Alignment:
| Q |
19 |
tttagaccagacaagactttaatgattaatgatattgacaccgtcgtacctgtcgcggccacaaaggagttgaatatgttttgtgtggaagtcgaagaag |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23257828 |
tttagaccagacaagactttaatgattaatgatattgacaccgtagtacctgtcgtggccacaaaggagttgaatatgttttgtgtggaagtcgaagaag |
23257729 |
T |
|
| Q |
119 |
agcaggaaatgttgaatatgccagaattgttgaggaatatggcactaatgtcccctacgcatagctttgagtatcatgatcagtatgaagatattcatgt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
23257728 |
agcaggaaatgttgaatatgccagaattgttgaggaatatggcactaatgtcccctacacatagctttgagtatcatgatcagtatgaagatattcatgt |
23257629 |
T |
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| Q |
219 |
acaagactttcaagatgatga |
239 |
Q |
| |
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||||||||||||||||||||| |
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| T |
23257628 |
acaagactttcaagatgatga |
23257608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 23251852 - 23251635
Alignment:
| Q |
19 |
tttagaccagacaagactttaatgattaatgatattgacaccgtcgtacctgtcgcggccacaaaggagttgaatatgttttgtgtggaagtcgaagaag |
118 |
Q |
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|||||||||||||| |||||||||| | ||| ||||||||||| ||| |||| | || ||| ||||| ||||||||||| |||| ||||||||||||| |
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| T |
23251852 |
tttagaccagacaatactttaatgaccagtgacattgacaccgttgtagctgttgtcgcaacacaggagctgaatatgtttcgtgttgaagtcgaagaag |
23251753 |
T |
|
| Q |
119 |
agcaggaaatgttgaatatgccagaattgttgaggaatatggcactaatgtcccctacgcatagctttgagtatcatgatcagtatgaagatattcatgt |
218 |
Q |
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|| ||| |||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| | |
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| T |
23251752 |
ag---gaagtgttgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttgggtatcatgatcagtatgaagatattcatat |
23251656 |
T |
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| Q |
219 |
acaagactttcaagatgatga |
239 |
Q |
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||||||||||||||||||||| |
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| T |
23251655 |
acaagactttcaagatgatga |
23251635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 23247440 - 23247223
Alignment:
| Q |
19 |
tttagaccagacaagactttaatgattaatgatattgacaccgtcgtacctgtcgcggccacaaaggagttgaatatgttttgtgtggaagtcgaagaag |
118 |
Q |
| |
|
|||||||||||||| |||||||||| ||| |||||||||| ||||| ||||| |||||||||||| |||||||||||||||||||||| || ||| |
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| T |
23247440 |
tttagaccagacaatactttaatgactaacaatattgacactatcgtagatgtcgtcgccacaaaggagctgaatatgttttgtgtggaagttgatgaac |
23247341 |
T |
|
| Q |
119 |
agcaggaaatgttgaatatgccagaattgttgaggaatatggcactaatgtcccctacgcatagctttgagtatcatgatcagtatgaagatattcatgt |
218 |
Q |
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|| |||||||||||||||||||||| |||| |||||||||||| | ||||| ||||| ||||||||||||||||||| ||||||| ||||||||||| |
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| T |
23247340 |
aggaggaaatgttgaatatgccagagttgtggaggaatatggcgttgatgtcacctacacatagctttgagtatcatg---agtatgacgatattcatgt |
23247244 |
T |
|
| Q |
219 |
acaagactttcaagatgatga |
239 |
Q |
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|||||| |||||||||||||| |
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| T |
23247243 |
acaagattttcaagatgatga |
23247223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 23266383 - 23266169
Alignment:
| Q |
19 |
tttagaccagacaagactttaatgattaatgatattgacaccgtcgtacctgtcgcggccacaaaggagttgaatatgttttgtgtggaagtcgaagaag |
118 |
Q |
| |
|
|||||||||||||| ||| ||||||||| | ||||| || || ||| |||| | |||||||||||||||||||||||||||||||||| |||||| |
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| T |
23266383 |
tttagaccagacaatactataatgattaccaacattgagactgttgtagctgttgtcgccacaaaggagttgaatatgttttgtgtggaag---aagaag |
23266287 |
T |
|
| Q |
119 |
agcaggaaatgttgaatatgccagaattgttgaggaatatggcactaatgtcccctacgcatagctttgagtatcatgatcagtatgaagatattcatgt |
218 |
Q |
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|| ||||||||||||||||| || || | ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||| | |
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| T |
23266286 |
ag---gaaatgttgaatatgccggagttttggaggaatatggcactaatgtcccctacacatagctttgagtatcatgatcaatatgaagattttcattt |
23266190 |
T |
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| Q |
219 |
acaagactttcaagatgatga |
239 |
Q |
| |
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|||||||||||||||||||| |
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| T |
23266189 |
tcaagactttcaagatgatga |
23266169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 87 - 189
Target Start/End: Complemental strand, 23289731 - 23289629
Alignment:
| Q |
87 |
gttgaatatgttttgtgtggaagtcgaagaagagcaggaaatgttgaatatgccagaattgttgaggaatatggcactaatgtcccctacgcatagcttt |
186 |
Q |
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|||||||||||||||||||||||||||| |||| ||||| |||||||||||| ||| |||| || ||||||||||||||||||||||| ||||| ||| |
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| T |
23289731 |
gttgaatatgttttgtgtggaagtcgaaaaagaagaggaagtgttgaatatgcaagagttgtggaaaaatatggcactaatgtcccctacacatagtttt |
23289632 |
T |
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| Q |
187 |
gag |
189 |
Q |
| |
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||| |
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| T |
23289631 |
gag |
23289629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 87 - 182
Target Start/End: Complemental strand, 23283391 - 23283296
Alignment:
| Q |
87 |
gttgaatatgttttgtgtggaagtcgaagaagagcaggaaatgttgaatatgccagaattgttgaggaatatggcactaatgtcccctacgcatag |
182 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||| ||||||||||| |||| ||| |||||||||||| ||||||||||||| ||||| |
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| T |
23283391 |
gttgaatatgttttgtgtggaagtcgaaaaagaagaggaagtgttgaatatgtcagagatgtggaggaatatggcgttaatgtcccctacacatag |
23283296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 131 - 234
Target Start/End: Complemental strand, 23391174 - 23391074
Alignment:
| Q |
131 |
tgaatatgccagaattgttgaggaatatggcactaatgtcccctacgcatagctttgagtatcatgatcagtatgaagatattcatgtacaagactttca |
230 |
Q |
| |
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|||| |||||||| |||||||||||||||||||||||||| ||||| ||||||| || |||| ||| | |||||| |||||||||| ||||||||||| |
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| T |
23391174 |
tgaacatgccagagttgttgaggaatatggcactaatgtctcctacacatagctctgggtataatg---aatatgaaaatattcatgttcaagactttca |
23391078 |
T |
|
| Q |
231 |
agat |
234 |
Q |
| |
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|||| |
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| T |
23391077 |
agat |
23391074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 23593082 - 23593009
Alignment:
| Q |
116 |
aagagcaggaaatgttgaatatgccagaattgttgaggaatatggcactaatgtcccctacgcatagctttgag |
189 |
Q |
| |
|
||||| ||||| ||||||| || ||||| | ||||||||||||||| |||||||||||||| |||||| ||||| |
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| T |
23593082 |
aagaggaggaagtgttgaacattccagagtcgttgaggaatatggctctaatgtcccctacacatagcgttgag |
23593009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 23633872 - 23633835
Alignment:
| Q |
148 |
ttgaggaatatggcactaatgtcccctacgcatagctt |
185 |
Q |
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|||||||||||||| |||||||||||||| |||||||| |
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| T |
23633872 |
ttgaggaatatggctctaatgtcccctacacatagctt |
23633835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 23283498 - 23283458
Alignment:
| Q |
22 |
agaccagacaagactttaatgattaatgatattgacaccgt |
62 |
Q |
| |
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|||||||||||||||||||||| ||| || ||||||||||| |
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| T |
23283498 |
agaccagacaagactttaatgactaacgacattgacaccgt |
23283458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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