View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18868_high_9 (Length: 340)
Name: NF18868_high_9
Description: NF18868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18868_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 131; Significance: 6e-68; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 66 - 233
Target Start/End: Complemental strand, 38085966 - 38085797
Alignment:
| Q |
66 |
ctaaacaattgccaatttgaattcttcaatcattagctaagcaccaacaaatccataattttcgtaatatttctcaccctgcttagttggttgaacaatt |
165 |
Q |
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| T |
38085966 |
ctaaacaagagccaatttgaattcttcaatcattagctaagcaccaacaaatccataatttttgtaatacttctcaccctgcttagttggttgaacaatt |
38085867 |
T |
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| Q |
166 |
gaaccataataaacaacaagagttg--tttatggtttgactcgaataactaagcataacatggatctaat |
233 |
Q |
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| T |
38085866 |
gaaccataataaacaacaagagttgtttttatagtttgactcgaataactaagaataacatggacctaat |
38085797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 265 - 324
Target Start/End: Complemental strand, 38084976 - 38084917
Alignment:
| Q |
265 |
tgaaacctattatgaataaaataaaataaataatccacaatctctattgatacatttact |
324 |
Q |
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| T |
38084976 |
tgaaacctattatgaataaaataaaataaataatccacaatctctattgatacatttact |
38084917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 38086290 - 38086233
Alignment:
| Q |
16 |
attttcacttcatcgccagaaaagttgaatacctttccagatgatacaaactaaacaa |
73 |
Q |
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| T |
38086290 |
attttcacttcattaccagaaaagttgaatacctttccagatgatacaaactaaacaa |
38086233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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