View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18868_low_15 (Length: 260)
Name: NF18868_low_15
Description: NF18868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18868_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 41557655 - 41557888
Alignment:
| Q |
19 |
tccctaaccttaactattcaatctcattcgttttttcaattcagttttcactcgaagtttgctagttaacctaaccaacagaaaatcaccgatcatcctc |
118 |
Q |
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| T |
41557655 |
tccctaaccttaactattcaatctcattcgttttttcaattcagttttcactcgaagtttgctagttaacctaaccaacagaaaatcaccgatcatcctc |
41557754 |
T |
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| Q |
119 |
atcgatcgattcaaaaatcactgtactctttcagattccaactggttcgttccattcttatctcaaatctcacattcatcatttatcgcaatcatcattt |
218 |
Q |
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| T |
41557755 |
atcgatcgattcaaaaatcactgtactctttcagattccaactggttcgttccattcttatctcaaatctcacattcatcatttatcgcaatcatcattt |
41557854 |
T |
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| Q |
219 |
ttgtttaatttctatgttctttacagcttctgtg |
252 |
Q |
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||||||||||||||||||||| |||||||||||| |
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| T |
41557855 |
ttgtttaatttctatgttcttcacagcttctgtg |
41557888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 50 - 252
Target Start/End: Original strand, 41541930 - 41542124
Alignment:
| Q |
50 |
tttttcaattcagttttcactcgaagtttgctagttaacctaaccaacagaaaatcaccgatcatcctcatcgatcgattcaaaaatcactgtactcttt |
149 |
Q |
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||||||| ||||| |||||||||||||| || | || || |||||| |||| ||| ||||||| |||||| ||||||||| ||||||||||||||||| |
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| T |
41541930 |
tttttcagttcagaattcactcgaagtttactcatcaatctcaccaacggaaactcatcgatcattctcatcaatcgattcagaaatcactgtactcttt |
41542029 |
T |
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| Q |
150 |
cagattccaactggttcgttccattcttatctcaaatctcacattcatcatttatcgcaatcatcatttttgtttaatttctatgttctttacagcttct |
249 |
Q |
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| T |
41542030 |
cagattccaactggttcgttctcttctaatctcaaa--------tcatgatttgtcgtaatcatcatttttgtttaatttctatgttcttcacagcttct |
41542121 |
T |
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