View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18868_low_21 (Length: 239)

Name: NF18868_low_21
Description: NF18868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18868_low_21
NF18868_low_21
[»] chr2 (27 HSPs)
chr2 (13-117)||(36273688-36273801)
chr2 (129-239)||(668066-668176)
chr2 (129-232)||(3329090-3329193)
chr2 (129-239)||(25424653-25424763)
chr2 (129-239)||(31440731-31440841)
chr2 (129-239)||(33867641-33867751)
chr2 (129-239)||(38620291-38620401)
chr2 (129-239)||(4480961-4481065)
chr2 (129-239)||(32422836-32422946)
chr2 (129-239)||(23231636-23231740)
chr2 (162-239)||(35048555-35048632)
chr2 (144-232)||(20936961-20937048)
chr2 (129-239)||(11788523-11788633)
chr2 (129-238)||(44070501-44070611)
chr2 (129-228)||(29546202-29546301)
chr2 (161-232)||(41935627-41935698)
chr2 (129-239)||(9205077-9205187)
chr2 (129-237)||(15234209-15234317)
chr2 (144-239)||(29155229-29155325)
chr2 (164-239)||(4289574-4289649)
chr2 (129-200)||(18974615-18974686)
chr2 (162-239)||(15161919-15161996)
chr2 (190-239)||(42968992-42969041)
chr2 (144-239)||(4592289-4592385)
chr2 (159-239)||(13142667-13142747)
chr2 (147-199)||(29221325-29221377)
chr2 (147-199)||(29334624-29334676)
[»] chr1 (39 HSPs)
chr1 (129-239)||(2978321-2978431)
chr1 (129-239)||(19996771-19996881)
chr1 (129-238)||(28220870-28220979)
chr1 (144-239)||(945397-945492)
chr1 (129-232)||(21260837-21260940)
chr1 (129-239)||(13312635-13312745)
chr1 (129-239)||(19506285-19506395)
chr1 (129-239)||(42069213-42069323)
chr1 (129-239)||(9222145-9222255)
chr1 (129-239)||(25815422-25815532)
chr1 (129-239)||(48964469-48964579)
chr1 (127-239)||(43634734-43634846)
chr1 (144-239)||(38491336-38491431)
chr1 (129-239)||(2975340-2975450)
chr1 (129-239)||(7842469-7842578)
chr1 (129-239)||(35978605-35978714)
chr1 (144-232)||(9472865-9472953)
chr1 (129-232)||(12560673-12560775)
chr1 (129-239)||(31646394-31646504)
chr1 (129-231)||(424471-424575)
chr1 (144-239)||(27783431-27783527)
chr1 (146-239)||(20414887-20414980)
chr1 (190-239)||(25059064-25059113)
chr1 (162-239)||(47662210-47662287)
chr1 (129-228)||(32133401-32133501)
chr1 (129-232)||(2433163-2433266)
chr1 (129-239)||(4893388-4893498)
chr1 (129-239)||(29054701-29054811)
chr1 (129-239)||(29184989-29185099)
chr1 (129-239)||(35739107-35739217)
chr1 (129-239)||(39026643-39026753)
chr1 (162-232)||(48514367-48514437)
chr1 (129-239)||(48796439-48796549)
chr1 (129-238)||(8981655-8981764)
chr1 (159-232)||(50099745-50099818)
chr1 (146-222)||(236281-236357)
chr1 (128-175)||(13797121-13797168)
chr1 (129-200)||(33794524-33794595)
chr1 (211-239)||(14106304-14106332)
[»] chr5 (18 HSPs)
chr5 (129-232)||(14087567-14087670)
chr5 (129-239)||(6224927-6225037)
chr5 (129-239)||(7977934-7978044)
chr5 (129-239)||(41616487-41616597)
chr5 (144-239)||(29455709-29455804)
chr5 (129-239)||(15719276-15719386)
chr5 (129-239)||(14088172-14088282)
chr5 (129-237)||(14645219-14645326)
chr5 (129-232)||(31149797-31149900)
chr5 (144-232)||(41983166-41983254)
chr5 (129-239)||(19254582-19254692)
chr5 (129-239)||(4572171-4572282)
chr5 (134-193)||(22632385-22632444)
chr5 (161-239)||(15674073-15674151)
chr5 (163-239)||(4902035-4902111)
chr5 (129-239)||(33347170-33347280)
chr5 (162-239)||(30774742-30774820)
chr5 (129-239)||(36470545-36470654)
[»] chr3 (29 HSPs)
chr3 (129-232)||(5041160-5041263)
chr3 (129-232)||(23299627-23299730)
chr3 (129-239)||(24987506-24987616)
chr3 (129-239)||(25467384-25467494)
chr3 (129-239)||(44792742-44792852)
chr3 (129-239)||(49359860-49359970)
chr3 (129-239)||(50481163-50481273)
chr3 (129-239)||(30248153-30248263)
chr3 (129-232)||(12905513-12905616)
chr3 (145-239)||(40563853-40563947)
chr3 (129-199)||(48079972-48080042)
chr3 (129-238)||(5908129-5908238)
chr3 (144-232)||(19873006-19873094)
chr3 (129-239)||(39352364-39352469)
chr3 (144-239)||(41923882-41923977)
chr3 (129-239)||(19618583-19618693)
chr3 (129-239)||(45079305-45079415)
chr3 (144-239)||(13735726-13735822)
chr3 (144-239)||(38694913-38695008)
chr3 (161-239)||(41410357-41410435)
chr3 (129-239)||(46819058-46819168)
chr3 (140-238)||(50508972-50509070)
chr3 (147-239)||(22845228-22845319)
chr3 (129-232)||(49374691-49374794)
chr3 (174-232)||(6408517-6408575)
chr3 (129-239)||(19454683-19454793)
chr3 (129-178)||(11671733-11671782)
chr3 (162-239)||(43657199-43657276)
chr3 (128-232)||(51055356-51055460)
[»] chr7 (31 HSPs)
chr7 (129-230)||(9477568-9477669)
chr7 (129-239)||(16567476-16567586)
chr7 (129-239)||(16598076-16598186)
chr7 (129-239)||(46181122-46181232)
chr7 (129-239)||(19804947-19805057)
chr7 (129-232)||(33067570-33067673)
chr7 (129-239)||(27398489-27398599)
chr7 (129-191)||(43702545-43702607)
chr7 (129-239)||(43224233-43224337)
chr7 (127-233)||(9223549-9223655)
chr7 (129-239)||(10066354-10066464)
chr7 (129-227)||(39414487-39414585)
chr7 (129-232)||(5023293-5023395)
chr7 (129-199)||(5924193-5924263)
chr7 (161-239)||(48558779-48558857)
chr7 (145-232)||(31454823-31454910)
chr7 (127-238)||(40789627-40789738)
chr7 (129-232)||(42284414-42284517)
chr7 (129-232)||(9355264-9355367)
chr7 (161-239)||(1876138-1876216)
chr7 (129-239)||(17172314-17172424)
chr7 (129-239)||(44300622-44300732)
chr7 (129-199)||(46782997-46783067)
chr7 (129-198)||(35092849-35092918)
chr7 (161-239)||(38470014-38470092)
chr7 (129-226)||(3551641-3551738)
chr7 (161-198)||(28067407-28067444)
chr7 (162-239)||(34152452-34152529)
chr7 (162-239)||(34174595-34174672)
chr7 (127-239)||(26299060-26299172)
chr7 (163-239)||(36074219-36074295)
[»] chr4 (35 HSPs)
chr4 (129-232)||(3387311-3387414)
chr4 (129-239)||(12185691-12185801)
chr4 (129-239)||(12187683-12187793)
chr4 (129-239)||(14576704-14576814)
chr4 (129-239)||(42053356-42053466)
chr4 (129-239)||(29149104-29149214)
chr4 (129-239)||(32655610-32655720)
chr4 (129-239)||(52180866-52180976)
chr4 (129-239)||(42755253-42755363)
chr4 (129-232)||(34459726-34459829)
chr4 (129-232)||(46080630-46080733)
chr4 (144-238)||(29994247-29994341)
chr4 (140-238)||(33983060-33983158)
chr4 (144-239)||(7250596-7250691)
chr4 (144-232)||(22313450-22313538)
chr4 (129-239)||(11034608-11034718)
chr4 (129-239)||(21075742-21075852)
chr4 (129-239)||(28234260-28234370)
chr4 (146-239)||(2073700-2073793)
chr4 (144-232)||(52595472-52595560)
chr4 (129-199)||(22829662-22829732)
chr4 (154-232)||(23147351-23147429)
chr4 (129-239)||(29405961-29406071)
chr4 (129-239)||(2225045-2225157)
chr4 (163-239)||(8806014-8806090)
chr4 (129-188)||(3098056-3098115)
chr4 (129-232)||(8065877-8065980)
chr4 (128-239)||(25938276-25938387)
chr4 (129-232)||(54932823-54932926)
chr4 (129-188)||(54979281-54979340)
chr4 (129-231)||(1758076-1758178)
chr4 (129-239)||(53140523-53140633)
chr4 (167-239)||(652195-652267)
chr4 (144-232)||(50982043-50982131)
chr4 (144-230)||(27586681-27586767)
[»] scaffold0005 (1 HSPs)
scaffold0005 (129-239)||(240561-240671)
[»] chr8 (22 HSPs)
chr8 (129-238)||(24891514-24891624)
chr8 (144-232)||(2621063-2621151)
chr8 (127-239)||(19643609-19643721)
chr8 (129-239)||(24789415-24789525)
chr8 (129-232)||(2472383-2472486)
chr8 (129-239)||(3616960-3617070)
chr8 (129-196)||(1667171-1667238)
chr8 (140-239)||(25500060-25500159)
chr8 (170-239)||(26561323-26561392)
chr8 (129-232)||(6109525-6109628)
chr8 (129-239)||(7579960-7580070)
chr8 (129-226)||(30801150-30801248)
chr8 (128-232)||(1376087-1376191)
chr8 (129-232)||(37226875-37226978)
chr8 (127-232)||(221883-221989)
chr8 (127-232)||(691038-691144)
chr8 (127-232)||(735506-735612)
chr8 (127-232)||(859402-859508)
chr8 (129-239)||(20216110-20216220)
chr8 (129-239)||(20235708-20235818)
chr8 (161-239)||(38019983-38020061)
chr8 (144-188)||(29528331-29528375)
[»] chr6 (15 HSPs)
chr6 (129-232)||(13534289-13534393)
chr6 (129-199)||(6937966-6938036)
chr6 (129-239)||(33331510-33331620)
chr6 (129-239)||(20691679-20691789)
chr6 (162-239)||(9062236-9062313)
chr6 (129-232)||(6337143-6337246)
chr6 (129-232)||(12429333-12429436)
chr6 (129-239)||(1329652-1329762)
chr6 (129-239)||(33328498-33328608)
chr6 (144-239)||(31784063-31784158)
chr6 (129-239)||(6799516-6799626)
chr6 (129-239)||(6338026-6338136)
chr6 (129-239)||(24447215-24447325)
chr6 (144-232)||(29641550-29641638)
chr6 (145-188)||(21455575-21455618)
[»] scaffold0160 (1 HSPs)
scaffold0160 (129-239)||(26221-26331)
[»] scaffold0312 (1 HSPs)
scaffold0312 (129-231)||(5974-6078)
[»] scaffold0024 (1 HSPs)
scaffold0024 (162-239)||(110100-110177)
[»] scaffold0164 (2 HSPs)
scaffold0164 (167-239)||(7191-7263)
scaffold0164 (167-239)||(15072-15144)
[»] scaffold0242 (2 HSPs)
scaffold0242 (161-232)||(13174-13245)
scaffold0242 (161-232)||(22009-22080)


Alignment Details
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 117
Target Start/End: Original strand, 36273688 - 36273801
Alignment:
Q  13 gttttgacattcattcatgcatgcaagttctaagtaaatcgagaaatgt---------gtttagagtaatatgccattttctgaaccacaaaatcgttaa 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||    
T  36273688 gttttgacattcattcatgcatgcaagttctaagtaaatcgagaaatgtaggatttctgtttagagtaatatgccattttctgaaccacaaaatcgttaa 36273787  T
Q  104 gtacttatcaagtt 117  Q
    ||||||| ||||||    
T  36273788 gtacttaccaagtt 36273801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 668176 - 668066
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| ||||||||| |||||||||||||| ||||||| |||||||||||||||| ||||||  || ||||| ||||||||||||||||||    
T  668176 aatgggtacccaatgggtagggtactacaatgcccatcctcatacccacatttgtaaaaattactcgtacccgtgcccgtatcctcgtgggcaacaactt 668077  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  668076 tagtgcccttc 668066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 129 - 232
Target Start/End: Original strand, 3329090 - 3329193
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||| | ||| ||||||||| |||| ||||| ||||||||||||||||| |||||| |||||||||| ||| ||||| ||||||||||||||||||    
T  3329090 aatgggtatccaatgggtagggtactacagtgcccgtccccatacccgcatttataaaaaatacccgtacccatgcccgtaccctcgtgggcaacaactt 3329189  T
Q  229 tagt 232  Q
    ||||    
T  3329190 tagt 3329193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 25424653 - 25424763
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| ||||||||| ||||||| || ||||||||||||||||| |||||| || |||||||  || ||||| ||||||||||||||||||    
T  25424653 aatgggtacccaatgggtagggtactacaatgtccgtccccatacccgcatttataaaaaatatccgtacccgtgcccgtaccctcgtgggcaacaactt 25424752  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  25424753 tagtccccttc 25424763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 31440841 - 31440731
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| ||||||||| |||||||||| |||| |||||||||||| |||||| ||||||||||  || ||||| |||||||||||| |||||    
T  31440841 aatgggtacccaatgggtagggtactacaatgcccgtcccaatacccgcatttataaaaaatacccgtacccgtgcccgtaccctcgtgggcaataactt 31440742  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  31440741 tagtccccttc 31440731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 33867751 - 33867641
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| ||||||||| ||||||| || ||||||||||||||||| |||||| || |||||||  || ||||| ||||||||||||||||||    
T  33867751 aatgggtacccaatgggtagggtactacaatgtccgtccccatacccgcatttataaaaaatatccgtacccgtgcccgtaccctcgtgggcaacaactt 33867652  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  33867651 tagtccccttc 33867641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 38620291 - 38620401
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||  ||| ||||||||| ||||||||||||||||||||| |||||| |||||| ||||||||||  || || || |||| |||||||||||||    
T  38620291 aatgggtactcaatgggtagggtactacaatgcccatccccatacctgcatttataaaaaatacccgtacccgtgcccataccctcatgggcaacaactt 38620390  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  38620391 tagtccccttc 38620401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 4480961 - 4481065
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| |||| |||| |||||||||| ||||||||||||||||| |||||| |||||||||      ||||| ||||||||||||||||||    
T  4480961 aatgggtacccaatgggtaaggtactacaatgcccgtccccatacccgcatttataaaaaatacccgtac------ccgtaccctcgtgggcaacaactt 4481054  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  4481055 tagtccccttc 4481065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 32422946 - 32422836
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| | || |||| |||||||||| ||||||||||||||||| |||||| ||  ||||||  || ||||| ||||||||||||||||||    
T  32422946 aatgggtacccaatggatacggtactacaatgcccgtccccatacccgcatttataaaaaatattcgtacccgtgcccgtaccctcgtgggcaacaactt 32422847  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  32422846 tagtccccttc 32422836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 23231636 - 23231740
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| ||||||||| |||||||||| |||||||||||  |||| |||||| |||||||||      ||||| |||||||||||||||||     
T  23231636 aatgggtacccaatgggtagggtactacaatgcccgtccccatacccaaatttataaaaaatacccgtac------ccgtaccctcgtgggcaacaactg 23231729  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  23231730 tagtccccttc 23231740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 239
Target Start/End: Original strand, 35048555 - 35048632
Alignment:
Q  162 ccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagtacccttc 239  Q
    |||||||||||||||| |||||||||| | | ||||||  || ||||| |||||||||||||||||||||| ||||||    
T  35048555 ccatccccatacccgcgtttgtaaaaaatgctcgtacccgtgcccgtaccctcgtgggcaacaactttagtgcccttc 35048632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 232
Target Start/End: Original strand, 20936961 - 20937048
Alignment:
Q  144 ggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagt 232  Q
    ||||||||| |||| ||||||||| |||||||| ||||||||||| ||||||||||  |||  ||| ||||||||| ||||||||||||    
T  20936961 ggtagggtactacagtgcccatcctcatacccgtatttgtaaaaaatacccgtacccgtgtttgtaccctcgtggg-aacaactttagt 20937048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 11788523 - 11788633
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||  ||| |||||||||||| | |  |||||||||||||||| |||||||||| | | | ||||  || ||||| ||||||||||||||| ||    
T  11788523 aatgggtactcaatgggtagggtattatagtatccatccccatacccgcgtttgtaaaaagtgcgcatacccgtgcccgtaccctcgtgggcaacaattt 11788622  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  11788623 tagtgcccttc 11788633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 238
Target Start/End: Complemental strand, 44070611 - 44070501
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaat-tacccgtacctatgtccgtaacctcgtgggcaacaact 227  Q
    |||||||||  ||| ||||||||| |||| ||||| ||  |||| |||||||| ||||||  ||||||||||  || ||||| |||||||||||||||||    
T  44070611 aatgggtactcaatgggtagggtactacagtgcccgtcttcatatccgcatttataaaaaaatacccgtacccgtgcccgtaccctcgtgggcaacaact 44070512  T
Q  228 ttagtaccctt 238  Q
    ||||| |||||    
T  44070511 ttagtcccctt 44070501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 228
Target Start/End: Complemental strand, 29546301 - 29546202
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| | ||||||| || | | ||||||||||||||| | |||||||||| ||||||||||     ||||| ||||||||||||||||||    
T  29546301 aatgggtacccaatggatagggtactatagtacccatccccatacccacgtttgtaaaaaatacccgtacccggacccgtatcctcgtgggcaacaactt 29546202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 41935698 - 41935627
Alignment:
Q  161 cccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagt 232  Q
    |||||| |||||||||| |||||||||| || | |||||   ||||||| ||||||||||||||||||||||    
T  41935698 cccatctccatacccgcgtttgtaaaaaatatctgtacccgggtccgtaccctcgtgggcaacaactttagt 41935627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 9205077 - 9205187
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    ||||||| || ||||||||||||| | || ||||| || ||||| |||||||| |||||| |||  |||||  |||||||| ||||||||| || |||||    
T  9205077 aatgggtgcccaataggtagggtactgcagtgcccgtctccataaccgcatttataaaaaatacttgtacccgtgtccgtatcctcgtgggtaataactt 9205176  T
Q  229 tagtacccttc 239  Q
    | || ||||||    
T  9205177 tggtccccttc 9205187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 237
Target Start/End: Original strand, 15234209 - 15234317
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| ||||||||| || | | ||||  ||||||| ||| |||||||||| |  |||||||   | |||||  |||||||||||||||||    
T  15234209 aatgggtacccaatgggtagggtactatagtacccaatcccatactcgcgtttgtaaaaaatgtccgtacccgagcccgtactctcgtgggcaacaactt 15234308  T
Q  229 tagtaccct 237  Q
    |||||||||    
T  15234309 tagtaccct 15234317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 239
Target Start/End: Original strand, 29155229 - 29155325
Alignment:
Q  144 ggtagggtattacaatgcccatcccc-atacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagtacccttc 239  Q
    ||||||||| | |||||||| ||||| ||||||||||||||||||  ||| |||||| ||||||| | | | |||| ||||||||||| ||| ||||    
T  29155229 ggtagggtactgcaatgcccttcccccatacccgcatttgtaaaatatactcgtacccatgtccgcacctttgtggacaacaactttaatactcttc 29155325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 239
Target Start/End: Original strand, 4289574 - 4289649
Alignment:
Q  164 atccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagtacccttc 239  Q
    |||||||||||| |||||||||||| |  |||||||   | ||||| |||||||||||||||||||| | ||||||    
T  4289574 atccccataccctcatttgtaaaaaatgtccgtacccgagcccgtaccctcgtgggcaacaactttaatgcccttc 4289649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 200
Target Start/End: Original strand, 18974615 - 18974686
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacct 200  Q
    ||||||||| |||  ||||||||| || | | ||||||||||||||||| |||| ||||| |||||||||||    
T  18974615 aatgggtacataacgggtagggtactatagtacccatccccatacccgcgtttgcaaaaaatacccgtacct 18974686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 239
Target Start/End: Original strand, 15161919 - 15161996
Alignment:
Q  162 ccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagtacccttc 239  Q
    ||||||||||| |||| |||||||||| |  |||||||  || | ||  |||||||||||||||||||||| ||||||    
T  15161919 ccatccccatatccgcgtttgtaaaaaatgtccgtacccgtgcctgttccctcgtgggcaacaactttagtgcccttc 15161996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 42968992 - 42969041
Alignment:
Q  190 tacccgtacctatgtccgtaacctcgtgggcaacaactttagtacccttc 239  Q
    ||||||||||  || ||||| |||||||||||||||||||||| ||||||    
T  42968992 tacccgtacccgtgcccgtaccctcgtgggcaacaactttagtgcccttc 42969041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 239
Target Start/End: Complemental strand, 4592385 - 4592289
Alignment:
Q  144 ggtagggtattacaatgcccatccccatacccgcatttgtaaaaat-tacccgtacctatgtccgtaacctcgtgggcaacaactttagtacccttc 239  Q
    ||||||||| |||| ||||| ||| |||||| |||||||||||||  ||| || |||  ||  |||| |||||| ||||||||||||||| ||||||    
T  4592385 ggtagggtactacagtgcccttcctcataccagcatttgtaaaaaaatacacgcacccgtgctcgtaccctcgtcggcaacaactttagtgcccttc 4592289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 13142747 - 13142667
Alignment:
Q  159 tgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagtacccttc 239  Q
    ||||| |||| |||||||||||| |||||| |||  |||    |||||||| |||| ||||||||||||||||| ||||||    
T  13142747 tgcccgtccctatacccgcatttataaaaaatacttgtagtcgtgtccgtaccctcttgggcaacaactttagtccccttc 13142667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 199
Target Start/End: Complemental strand, 29221377 - 29221325
Alignment:
Q  147 agggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacc 199  Q
    |||||| || ||||||| | |||||||||||||||||||||| | ||||||||    
T  29221377 agggtactataatgcccgttcccatacccgcatttgtaaaaaatgcccgtacc 29221325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 199
Target Start/End: Complemental strand, 29334676 - 29334624
Alignment:
Q  147 agggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacc 199  Q
    |||||| || ||||||| | |||||||||||||||||||||| | ||||||||    
T  29334676 agggtactataatgcccgttcccatacccgcatttgtaaaaaatgcccgtacc 29334624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 2978321 - 2978431
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||  |||| ||| ||| ||||||||||||||    
T  2978321 aatgggtacccaatgggtagggtactacaatgcccatccccatacccgcatttttaaaaattacccgtacccgtgtctgtacccttgtgggcaacaactt 2978420  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  2978421 tagtgcccttc 2978431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 19996881 - 19996771
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    ||||||| || ||| ||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||| || ||||| ||||||||||||||||||    
T  19996881 aatgggtgcccaatgggtagggtactacaatgcccatccccatatccgcatttgtaaaaattactcgtacctgtgcccgtaccctcgtgggcaacaactt 19996782  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  19996781 tagtgcccttc 19996771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 129 - 238
Target Start/End: Original strand, 28220870 - 28220979
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |  || ||||| ||||||||||||||||||    
T  28220870 aatgggtacccaatgggtagggtactacaatgcccatccccatacccgcatttttaaaaattacccgtatccgtgcccgtaccctcgtgggcaacaactt 28220969  T
Q  229 tagtaccctt 238  Q
    |||| |||||    
T  28220970 tagtgccctt 28220979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 144 - 239
Target Start/End: Original strand, 945397 - 945492
Alignment:
Q  144 ggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagtacccttc 239  Q
    ||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||  ||| ||||| |||||||||||||||||||||| ||||||    
T  945397 ggtagggtactacaatgcccatccccatacccgtatttttaaaaattacccgtacacatgcccgtatcctcgtgggcaacaactttagtgcccttc 945492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 129 - 232
Target Start/End: Complemental strand, 21260940 - 21260837
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||| | ||  |  ||||| || ||||||||||||||||||    
T  21260940 aatgggtacctaatgggtagggtactacaatgcccatccccatacccgcatttttaaaaattatcagtgtccgtgtccataccctcgtgggcaacaactt 21260841  T
Q  229 tagt 232  Q
    ||||    
T  21260840 tagt 21260837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 13312635 - 13312745
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| ||||||||| |||||||||| ||||||||||||||||| |||||| |||||||| |  || ||||| ||||||| ||||||||||    
T  13312635 aatgggtacccaatgggtagggtactacaatgcccgtccccatacccgcatttataaaaaatacccgtatccgtgcccgtaccctcgtgagcaacaactt 13312734  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  13312735 tagtccccttc 13312745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 19506285 - 19506395
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||| | ||| ||||||||| || |||| ||||||||||||||| |||| ||||||||||||||||   |||||||| ||||||||||||||||||    
T  19506285 aatgggtatccaatgggtagggtactataatgtccatccccatacccgaatttttaaaaattacccgtactcgtgtccgtaccctcgtgggcaacaactt 19506384  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  19506385 tagtgcccttc 19506395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 42069323 - 42069213
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    ||||||| || ||| ||||||||| |||| ||||| ||||||||||||||||| |||||| ||||||||||  || ||||| ||||||||||||||||||    
T  42069323 aatgggtgcccaatgggtagggtactacagtgcccgtccccatacccgcatttataaaaaatacccgtacccgtgcccgtaccctcgtgggcaacaactt 42069224  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  42069223 tagtccccttc 42069213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 9222145 - 9222255
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||| | ||| ||||||||| |||||||||| |||||||||||||||||  ||||| || |||||||  ||| |||| ||||||||||||||||||    
T  9222145 aatgggtatccaatgggtagggtactacaatgcccgtccccatacccgcatttacaaaaaatatccgtacccgtgttcgtaccctcgtgggcaacaactt 9222244  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  9222245 tagtccccttc 9222255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 25815532 - 25815422
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| ||||||||| |||||||||| ||||||||||||||||| |||||| || |||||||  || || || ||||||||||||||||||    
T  25815532 aatgggtacccaatgggtagggtactacaatgcccgtccccatacccgcatttataaaaaatatccgtacccgtgcccataccctcgtgggcaacaactt 25815433  T
Q  229 tagtacccttc 239  Q
    | || ||||||    
T  25815432 tggtccccttc 25815422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 48964579 - 48964469
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| ||||||||| |||| ||||  ||||||||||||||||| |||||| ||||||| ||  || ||||| ||||||||||||||||||    
T  48964579 aatgggtacccaatgggtagggtactacagtgcctgtccccatacccgcatttataaaaaatacccgtgcccttgcccgtatcctcgtgggcaacaactt 48964480  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  48964479 tagtccccttc 48964469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 127 - 239
Target Start/End: Complemental strand, 43634846 - 43634734
Alignment:
Q  127 gtaatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaac 226  Q
    ||||||||| || ||| | ||||||||||||||| || || |||||||||||||| |||||| |||||| |||| || | ||| ||||||||||||||||    
T  43634846 gtaatgggtgcccaattgatagggtattacaatgtccgtctccatacccgcatttataaaaaatacccgcacctgtgcctgtaccctcgtgggcaacaac 43634747  T
Q  227 tttagtacccttc 239  Q
    |||||| ||||||    
T  43634746 tttagtccccttc 43634734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 144 - 239
Target Start/End: Original strand, 38491336 - 38491431
Alignment:
Q  144 ggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagtacccttc 239  Q
    ||||||||| ||||||| |||||| ||| |||||||||||||||||||  ||||| | || ||||| |||||| ||||||||||||||||||||||    
T  38491336 ggtagggtactacaatgtccatcctcattcccgcatttgtaaaaattaatcgtacatgtgcccgtaccctcgtaggcaacaactttagtacccttc 38491431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 2975450 - 2975340
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| | ||| ||| ||||||| ||||   ||||||||||||| |||||||||||||||||  |||| ||| ||||||||||||||||||    
T  2975450 aatgggtacccaatggatagagtactacaatgtccattttcatacccgcatttttaaaaattacccgtacccgtgtctgtaccctcgtgggcaacaactt 2975351  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  2975350 tagtgcccttc 2975340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 7842469 - 7842578
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| | ||||||| |||||||||||||||||||||||||| |||||||||||| |||||   || |||| |||||||| ||||| ||||    
T  7842469 aatgggtacccaatggatagggtactacaatgcccatccccatacccgcatctgtaaaaattacacgtactcgtgcccgt-acctcgtgtgcaactactt 7842567  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  7842568 tagtgcccttc 7842578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 35978714 - 35978605
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| ||||||||| |||| ||||| ||||||||||| ||||| |||||| ||||||||||  ||||||| |||||  ||||||||||||    
T  35978714 aatgggtacccaatgggtagggtactacagtgcccgtccccatacccacatttataaaaaatacccgtacccgtgtccgt-acctcaagggcaacaactt 35978616  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  35978615 tagtccccttc 35978605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 144 - 232
Target Start/End: Original strand, 9472865 - 9472953
Alignment:
Q  144 ggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagt 232  Q
    |||||||||||| ||| ||  ||||||||||||||| |||||||| |  ||||||||| ||||||| ||||||||||||||||||||||    
T  9472865 ggtagggtattataatacctttccccatacccgcatatgtaaaaaatgtccgtacctaagtccgtatcctcgtgggcaacaactttagt 9472953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 129 - 232
Target Start/End: Complemental strand, 12560775 - 12560673
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| |||||||||| || || | ||||| |||| |||||||||||| |||||| ||||||||||  |||||||| |||| |||||||||||||    
T  12560775 aatgggtacccaataggtagg-tactatagtgcccgtccctatacccgcatttataaaaaatacccgtacccgtgtccgtatcctcatgggcaacaactt 12560677  T
Q  229 tagt 232  Q
    ||||    
T  12560676 tagt 12560673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 31646504 - 31646394
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| || |||||||||| || | | |||||| |||||||||| |||||||||| ||||||||||     ||||| ||||||||||||||||||    
T  31646504 aatgggtacccaacaggtagggtactatagtacccatctccatacccgcgtttgtaaaaaatacccgtacccggacccgtaccctcgtgggcaacaactt 31646405  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  31646404 tagtgcccttc 31646394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 231
Target Start/End: Original strand, 424471 - 424575
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaat--tacccgtacctatgtccgtaacctcgtgggcaacaac 226  Q
    |||||||||| ||| | ||||||| |||||||||| |||||||  |||||||| ||||||   ||||||||||  || ||||| ||||||||||||||||    
T  424471 aatgggtacccaatggatagggtactacaatgcccttccccatgtccgcatttataaaaaaaatacccgtacccgtgcccgtaccctcgtgggcaacaac 424570  T
Q  227 tttag 231  Q
    |||||    
T  424571 tttag 424575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 239
Target Start/End: Original strand, 27783431 - 27783527
Alignment:
Q  144 ggtagggtattacaatgcccatccccatacccgcatttgtaaaaat-tacccgtacctatgtccgtaacctcgtgggcaacaactttagtacccttc 239  Q
    |||||| || |||| ||||| ||||||| ||||||||| ||||||  ||||||||||  || ||||| |||||||||||||||||||||| ||||||    
T  27783431 ggtaggatactacactgcccgtccccatccccgcatttataaaaaaatacccgtacccgtgcccgtaccctcgtgggcaacaactttagtccccttc 27783527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 239
Target Start/End: Original strand, 20414887 - 20414980
Alignment:
Q  146 tagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagtacccttc 239  Q
    ||||||| || ||| ||||||||||||||| |||||||||||| | |||||| |   | ||||| |||||||||||||||||||| | ||||||    
T  20414887 tagggtactataatacccatccccataccctcatttgtaaaaaatgcccgtatccgagcccgtaccctcgtgggcaacaactttactgcccttc 20414980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 25059064 - 25059113
Alignment:
Q  190 tacccgtacctatgtccgtaacctcgtgggcaacaactttagtacccttc 239  Q
    ||||||||||| |||||||| |||||||||||||||||||||| ||||||    
T  25059064 tacccgtacctgtgtccgtatcctcgtgggcaacaactttagtgcccttc 25059113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 239
Target Start/End: Original strand, 47662210 - 47662287
Alignment:
Q  162 ccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagtacccttc 239  Q
    |||||||||||||| | |||||||||| | | ||||||  || ||||| |||||||||||||||||||||| ||||||    
T  47662210 ccatccccatacccacgtttgtaaaaaatgctcgtacccgtgcccgtaccctcgtgggcaacaactttagtgcccttc 47662287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 228
Target Start/End: Original strand, 32133401 - 32133501
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgta-cctatgtccgtaacctcgtgggcaacaact 227  Q
    |||||||||| ||| ||||||||| || | |  ||||||||||||||| |||||| |||| | |||||| ||| |||||||| |||||||||||| ||||    
T  32133401 aatgggtacccaatgggtagggtactatagtaaccatccccatacccgtatttgtgaaaaatgcccgtaccctgtgtccgtaccctcgtgggcaaaaact 32133500  T
Q  228 t 228  Q
    |    
T  32133501 t 32133501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 232
Target Start/End: Original strand, 2433163 - 2433266
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||| ||||| ||| |||||||| ||| | |||||||||||||| || ||||||||| || ||||  ||||  ||| |||| | ||||||||||||||||    
T  2433163 aatgagtacccaatgggtagggttttatagtgcccatccccatatccacatttgtaagaaatacctatacccgtgttcgtaccttcgtgggcaacaactt 2433262  T
Q  229 tagt 232  Q
    ||||    
T  2433263 tagt 2433266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 4893498 - 4893388
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| | ||||||| || | |  |||||||||||||| |||||||||||| |  |||||||   | ||||| ||||||||||||||||||    
T  4893498 aatgggtacccaatggatagggtactatagtatccatccccataccctcatttgtaaaaaatgtccgtacccgagcccgtaccctcgtgggcaacaactt 4893399  T
Q  229 tagtacccttc 239  Q
    || | ||||||    
T  4893398 taatgcccttc 4893388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 29054811 - 29054701
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| | ||||||| | || |||||||| ||||||| |||||| |||||| |||  |||||  ||| ||||  |||||||||||||||||    
T  29054811 aatgggtacccaatggatagggtactgcattgcccatctccatacctgcatttataaaaaatacatgtacccgtgttcgtattctcgtgggcaacaactt 29054712  T
Q  229 tagtacccttc 239  Q
    | || ||||||    
T  29054711 tggtccccttc 29054701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 29184989 - 29185099
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| | ||||||| || | |  |||||||||||||| |||||||||||| |  |||||||   | ||||| ||||||||||||||||||    
T  29184989 aatgggtacccaatggatagggtactatagtatccatccccataccctcatttgtaaaaaatgtccgtacccgagcccgtaccctcgtgggcaacaactt 29185088  T
Q  229 tagtacccttc 239  Q
    || | ||||||    
T  29185089 taatgcccttc 29185099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 35739217 - 35739107
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||  ||| |||||||||||| | |  |||||| ||||||||| |||||||||| | ||| ||||  || ||||| ||| ||||||||||| ||    
T  35739217 aatgggtactcaatgggtagggtattatagtatccatccacatacccgcgtttgtaaaaaatgcccatacccgtgcccgtacccttgtgggcaacaattt 35739118  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  35739117 tagtgcccttc 35739107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 39026643 - 39026753
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| | ||||||| || | |  ||||| |||||||| | |||||||||| | ||||||||   |||||||  |||||||||||||||||    
T  39026643 aatgggtacccaatggatagggtactatagtatccatcgccatacccacgtttgtaaaaaatgcccgtacccgagtccgtactctcgtgggcaacaactt 39026742  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  39026743 tagtgcccttc 39026753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 232
Target Start/End: Original strand, 48514367 - 48514437
Alignment:
Q  162 ccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagt 232  Q
    |||| ||||||||||| |||||||||| | | ||||||  |||||||| |||||||| |||||||||||||    
T  48514367 ccattcccatacccgcgtttgtaaaaaatgctcgtacccgtgtccgtaccctcgtggacaacaactttagt 48514437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 48796439 - 48796549
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| || |||||| || | | ||||| ||||||||||| |||||||||| |||||||| |   | || || |||||||||||| |||||    
T  48796439 aatgggtacccaatgggcagggtactatagtacccattcccatacccgcgtttgtaaaaaatacccgtatccgggcccataccctcgtgggcaataactt 48796538  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  48796539 tagtgcccttc 48796549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 238
Target Start/End: Complemental strand, 8981764 - 8981655
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||| | ||| ||||||||| || | |  |||| ||||||||||| |||||||||| || ||||||    | ||||| ||||||||||||||||||    
T  8981764 aatgggtatccaatgggtagggtactatagtatccattcccatacccgcgtttgtaaaaaatatccgtactcgagcccgtaccctcgtgggcaacaactt 8981665  T
Q  229 tagtaccctt 238  Q
    |||| |||||    
T  8981664 tagtgccctt 8981655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 232
Target Start/End: Original strand, 50099745 - 50099818
Alignment:
Q  159 tgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagt 232  Q
    ||||||||||||||||||| |||||||||| | ||||||||   ||||||| |||| |||| ||||| ||||||    
T  50099745 tgcccatccccatacccgcgtttgtaaaaaatgcccgtacccgagtccgtaccctcatgggtaacaattttagt 50099818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 236281 - 236357
Alignment:
Q  146 tagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaa 222  Q
    ||||||| |||||||||| ||  |||||||||||||||||||| || | |||||| || |||||  |||||||||||    
T  236281 tagggtactacaatgcccttcatcatacccgcatttgtaaaaaatatctgtacctttgcccgtactctcgtgggcaa 236357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 175
Target Start/End: Complemental strand, 13797168 - 13797121
Alignment:
Q  128 taatgggtacctaataggtagggtattacaatgcccatccccataccc 175  Q
    ||||||||| ||||| |||||||||||||| ||| |||||||||||||    
T  13797168 taatgggtatctaatcggtagggtattacagtgctcatccccataccc 13797121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 200
Target Start/End: Complemental strand, 33794595 - 33794524
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacct 200  Q
    ||||| |||| ||| |||||||||||||| | | | |||||||| |||||||| |||||| |||||||||||    
T  33794595 aatggatacccaatgggtagggtattacacttctcgtccccatatccgcatttataaaaaatacccgtacct 33794524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 239
Target Start/End: Original strand, 14106304 - 14106332
Alignment:
Q  211 cctcgtgggcaacaactttagtacccttc 239  Q
    |||||||||||||||||||||||||||||    
T  14106304 cctcgtgggcaacaactttagtacccttc 14106332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 129 - 232
Target Start/End: Original strand, 14087567 - 14087670
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| ||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||  || ||||| ||||||||||||||||||    
T  14087567 aatgggtacccaatgggtagggtactacaatgcccatccccatacccgcatttttaaaaattatccgtacccgtgcccgtaccctcgtgggcaacaactt 14087666  T
Q  229 tagt 232  Q
    ||||    
T  14087667 tagt 14087670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 6225037 - 6224927
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||| ||||| ||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||  || ||||| |||| |||||||||||||    
T  6225037 aatgggtatctaatgggtagggtactacaatgcccatccccatacccgcatttttaaaaattactcgtacccgtgcccgtaccctcatgggcaacaactt 6224938  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  6224937 tagtgcccttc 6224927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 7977934 - 7978044
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    ||||| |||| ||| ||||||||| |||||||||||||| |||||| |||||| |||||||||||||||||  |||||||| ||||||||||||||||||    
T  7977934 aatggttacccaatgggtagggtactacaatgcccatcctcatacctgcatttttaaaaattacccgtacccgtgtccgtaccctcgtgggcaacaactt 7978033  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  7978034 tagtgcccttc 7978044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 41616487 - 41616597
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||||||||||||| |||||||||| ||||||||||||||||| |||||| |||||||| |  || ||||| ||||||||||||||||||    
T  41616487 aatgggtacccaataggtagggtactacaatgcccgtccccatacccgcatttataaaaaatacccgtatccgtgcccgtaccctcgtgggcaacaactt 41616586  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  41616587 tagtccccttc 41616597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 144 - 239
Target Start/End: Original strand, 29455709 - 29455804
Alignment:
Q  144 ggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagtacccttc 239  Q
    ||||||||| || |||| |||||||||||||||||||| |||||||||||||||||  |||||||| |||||||||||||||||||||| ||||||    
T  29455709 ggtagggtactataatgtccatccccatacccgcatttttaaaaattacccgtacccgtgtccgtaccctcgtgggcaacaactttagtgcccttc 29455804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 15719386 - 15719276
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| ||||||||| |||||||||| |||||||| |||||||| |||||| ||||||||||  || ||||| ||||||||||||||||||    
T  15719386 aatgggtacccaatgggtagggtactacaatgcccgtccccataaccgcatttataaaaaatacccgtacccgtgcccgtaccctcgtgggcaacaactt 15719287  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  15719286 tagtccccttc 15719276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 14088172 - 14088282
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| ||||||||| |||| ||||| ||||||||||||||||| |||||| ||||||||||  || ||||| |||||| |||||||||||    
T  14088172 aatgggtacccaatgggtagggtactacagtgcccgtccccatacccgcatttataaaaaatacccgtacccgtgcccgtaccctcgtaggcaacaactt 14088271  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  14088272 tagtccccttc 14088282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 129 - 237
Target Start/End: Original strand, 14645219 - 14645326
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| ||||||||| |||||||||| |||| |||||||||||| |||||| ||||||||||  || ||||| ||||||||||||||||||    
T  14645219 aatgggtacccaatgggtagggtactacaatgcccgtccc-atacccgcatttataaaaaatacccgtacccgtgcccgtaccctcgtgggcaacaactt 14645317  T
Q  229 tagtaccct 237  Q
    |||| ||||    
T  14645318 tagtcccct 14645326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 129 - 232
Target Start/End: Complemental strand, 31149900 - 31149797
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| ||||||||| |||| ||||||||||||||||||||||| ||||||||| ||||||   |||| ||| ||||||||||||| ||||    
T  31149900 aatgggtacccaatgggtagggtactacactgcccatccccatacccgcatttttaaaaattatccgtactcgtgtctgtaccctcgtgggcaacgactt 31149801  T
Q  229 tagt 232  Q
    ||||    
T  31149800 tagt 31149797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 144 - 232
Target Start/End: Original strand, 41983166 - 41983254
Alignment:
Q  144 ggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagt 232  Q
    ||||||||| |||||||||||||| ||||||| |||||||||||||||||||||  | ||  |||| ||||||||||||||||||||||    
T  41983166 ggtagggtactacaatgcccatcctcataccctcatttgtaaaaattacccgtatatgtgctcgtaccctcgtgggcaacaactttagt 41983254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 19254692 - 19254582
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||||||| | ||||||| || | |  |||||||||||||| |||||||||||| | |||||||| | | ||||| |||||||| |||||||||    
T  19254692 aatgggtacctaatggatagggtactatagtatccatccccataccctcatttgtaaaaaatgcccgtacccaagcccgtaccctcgtggacaacaactt 19254593  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  19254592 tagtgcccttc 19254582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 4572171 - 4572282
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgt-aaaaattacccgtacctatgtccgtaacctcgtgggcaacaact 227  Q
    ||||| |||| |||||||||||||  ||| ||||| |||||||||| |||||| | ||||| || |||||||  |||||||| |||||||||||||||||    
T  4572171 aatggctacccaataggtagggtacaacagtgcccgtccccatacctgcatttataaaaaaatatccgtacccgtgtccgtatcctcgtgggcaacaact 4572270  T
Q  228 ttagtacccttc 239  Q
     |||| ||||||    
T  4572271 gtagtccccttc 4572282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 193
Target Start/End: Complemental strand, 22632444 - 22632385
Alignment:
Q  134 gtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacc 193  Q
    ||||| ||| ||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  22632444 gtacccaatgggtagggtactacaatgcccatccccatactcgcatttgtaaaaattacc 22632385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 239
Target Start/End: Complemental strand, 15674151 - 15674073
Alignment:
Q  161 cccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagtacccttc 239  Q
    ||||||||||||||||| |||||||||| ||||||||||   | ||||| ||||||||||||||||||| || ||||||    
T  15674151 cccatccccatacccgcgtttgtaaaaaatacccgtacccgggcccgtaccctcgtgggcaacaactttcgtgcccttc 15674073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 4902111 - 4902035
Alignment:
Q  163 catccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagtacccttc 239  Q
    ||||||||||||||| |||||||||| |  | |||||  |||||||| ||||||||| |||||||||||| ||||||    
T  4902111 catccccatacccgcgtttgtaaaaaatgtctgtacccgtgtccgtaccctcgtgggtaacaactttagtgcccttc 4902035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 33347280 - 33347170
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| || |||||| || | | |||||||||||| |||| |||||||||| ||  ||||||   | ||||| ||||||||||||||||||    
T  33347280 aatgggtacccaatgggcagggtactatagtacccatccccatatccgcgtttgtaaaaaatattcgtacccgggcccgtaccctcgtgggcaacaactt 33347181  T
Q  229 tagtacccttc 239  Q
    | || ||||||    
T  33347180 tcgtgcccttc 33347170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 239
Target Start/End: Original strand, 30774742 - 30774820
Alignment:
Q  162 ccatccccatacccgcatttgtaaaaat-tacccgtacctatgtccgtaacctcgtgggcaacaactttagtacccttc 239  Q
    ||||||||||| |||| ||||||||||  | | |||||   |||||||| |||||||||||||||||||||| ||||||    
T  30774742 ccatccccatatccgcgtttgtaaaaaaatgctcgtactcgtgtccgtaccctcgtgggcaacaactttagtgcccttc 30774820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 36470654 - 36470545
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| | ||||||| || | || ||||||||||||||  |||||||| ||  |||| |||  ||| ||||| ||| ||||||||||||||    
T  36470654 aatgggtacccaatggatagggtactatagtgtccatccccatacccagatttgtaagaaa-acccatactcatgcccgtacccttgtgggcaacaactt 36470556  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  36470555 tagtgcccttc 36470545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 129 - 232
Target Start/End: Complemental strand, 5041263 - 5041160
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    ||||| |||| ||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||   |||||||| ||||||||||||||||||    
T  5041263 aatggatacccaatgggtagggtactacaatgcccatccccatacccgcatttttaaaaattacccgtactcgtgtccgtaccctcgtgggcaacaactt 5041164  T
Q  229 tagt 232  Q
    ||||    
T  5041163 tagt 5041160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 129 - 232
Target Start/End: Complemental strand, 23299730 - 23299627
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| ||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||  || ||||| ||| ||||||||||||||    
T  23299730 aatgggtaccaaatgggtagggtactacaatgcccatccccatacccgcatttttaaaaattatccgtacccgtgcccgtacccttgtgggcaacaactt 23299631  T
Q  229 tagt 232  Q
    ||||    
T  23299630 tagt 23299627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 24987616 - 24987506
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| ||||||||| |||||||||| ||||||||||||||||| |||||| ||||||| ||  || ||||| ||||||||||||||||||    
T  24987616 aatgggtacccaatgggtagggtactacaatgcccgtccccatacccgcatttataaaaaatacccgtgcccgtgcccgtaccctcgtgggcaacaactt 24987517  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  24987516 tagtccccttc 24987506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 25467384 - 25467494
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| ||||||||| ||||||||||||||||||| |||||||| ||||||||||||| |||  || || || ||||||||||||||||||    
T  25467384 aatgggtacccaatgggtagggtactacaatgcccatccccatatccgcatttttaaaaattacccgcacccgtgcccataccctcgtgggcaacaactt 25467483  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  25467484 tagtgcccttc 25467494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 44792852 - 44792742
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| ||||||||| |||||||||| ||||||||||||||||| |||||| |||||||| |  || ||||| ||||||||||||||||||    
T  44792852 aatgggtacccaatgggtagggtactacaatgcccgtccccatacccgcatttataaaaaatacccgtatccgtgcccgtaccctcgtgggcaacaactt 44792753  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  44792752 tagtccccttc 44792742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 49359860 - 49359970
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| ||||||||| |||| ||||  ||||||||||||||||| |||||| |||||||| |  |||||||| ||||||||||||||||||    
T  49359860 aatgggtacccaatgggtagggtactacactgcctgtccccatacccgcatttataaaaaatacccgtatccgtgtccgtaccctcgtgggcaacaactt 49359959  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  49359960 tagtccccttc 49359970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 50481273 - 50481163
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| ||||||||| |||| ||||| ||||||| ||||||||| |||||| ||||||||||  || ||||| ||||||||||||||||||    
T  50481273 aatgggtacccaatgggtagggtactacagtgcccgtccccatccccgcatttataaaaaatacccgtacccgtgcccgtaccctcgtgggcaacaactt 50481174  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  50481173 tagtccccttc 50481163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 30248263 - 30248153
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| | ||||||| || | | ||||||||||||||| |||||||||||| | |||||||| | ||||||| ||||||||||||||||||    
T  30248263 aatgggtacccaatggatagggtactatagtacccatccccataccctcatttgtaaaaaatgcccgtacccaagtccgtaccctcgtgggcaacaactt 30248164  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  30248163 tagtgcccttc 30248153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 129 - 232
Target Start/End: Original strand, 12905513 - 12905616
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| |||||||| |||| ||||||| |||||||||||||| |||||||||||||||| ||||||  || |||||   |||||||||| |||||    
T  12905513 aatgggtaccgaataggtatggtactacaatgtccatccccatacccacatttgtaaaaattactcgtacccgtgcccgtacagtcgtgggcaataactt 12905612  T
Q  229 tagt 232  Q
    ||||    
T  12905613 tagt 12905616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 145 - 239
Target Start/End: Original strand, 40563853 - 40563947
Alignment:
Q  145 gtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagtacccttc 239  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||||    || ||||| |  ||||||||||||||||||| ||||||    
T  40563853 gtagggtactacaatacccatccccatacccgcatttgtaaaaattacccgtattcgtgcccgtatctccgtgggcaacaactttagtgcccttc 40563947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 129 - 199
Target Start/End: Original strand, 48079972 - 48080042
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacc 199  Q
    |||||||||| ||| ||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||    
T  48079972 aatgggtacccaatgggtagggtactacaatgcccatccccatacccacatttgtaaaaattatccgtacc 48080042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 129 - 238
Target Start/End: Original strand, 5908129 - 5908238
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| ||||||||| || | |  |||||||||||||||| |||||||||| | ||| ||||| || ||||| ||||||||||||||||||    
T  5908129 aatgggtacccaatgggtagggtactatagtatccatccccatacccgcgtttgtaaaaaatgcccatacctgtgcccgtaccctcgtgggcaacaactt 5908228  T
Q  229 tagtaccctt 238  Q
    |||| |||||    
T  5908229 tagtgccctt 5908238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 144 - 232
Target Start/End: Original strand, 19873006 - 19873094
Alignment:
Q  144 ggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagt 232  Q
    ||||||||| || ||||||||||  ||||||||||||||||||||||||   ||||| || ||||| ||||||||||||||||||||||    
T  19873006 ggtagggtactataatgcccatcttcatacccgcatttgtaaaaattacatatacctgtgcccgtaccctcgtgggcaacaactttagt 19873094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 39352364 - 39352469
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgt-aaaaattacccgtacctatgtccgtaacctcgtgggcaacaact 227  Q
    |||||||||||||| ||||||||| |||| ||||| ||||||||||||||||| | ||||| |||||||||      ||||  |||||||||||||||||    
T  39352364 aatgggtacctaatgggtagggtactacagtgcccgtccccatacccgcatttataaaaaaatacccgtac------ccgtgccctcgtgggcaacaact 39352457  T
Q  228 ttagtacccttc 239  Q
    ||||| ||||||    
T  39352458 ttagtccccttc 39352469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 239
Target Start/End: Original strand, 41923882 - 41923977
Alignment:
Q  144 ggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagtacccttc 239  Q
    ||||||||| |||||||||| | |  |||||||||||| |||||| |||||||| |  ||| |||| |||||||||||||||||||||| ||||||    
T  41923882 ggtagggtactacaatgcccgttcttatacccgcatttataaaaaatacccgtatccgtgttcgtaccctcgtgggcaacaactttagtccccttc 41923977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 19618583 - 19618693
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||| | ||| || |||||| |||| || || ||||||||||||||||| |||||| || |||||||  ||  |||| ||||||||||||||||||    
T  19618583 aatgggtatccaatgggcagggtactacattgtccgtccccatacccgcatttataaaaaatatccgtacccgtgctcgtaccctcgtgggcaacaactt 19618682  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  19618683 tagttcccttc 19618693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 45079415 - 45079305
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| | ||||||| || | | ||||||||||||||| |||||||||||| |  |||||||   | ||||| ||||||||||||||||||    
T  45079415 aatgggtacccaatggatagggtactatagtacccatccccataccctcatttgtaaaaaatgtccgtacccgagcccgtaccctcgtgggcaacaactt 45079316  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  45079315 tagtgcccttc 45079305  T

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Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 239
Target Start/End: Complemental strand, 13735822 - 13735726
Alignment:
Q  144 ggtagggtattacaatgcccatccccatacccgcatttgt-aaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagtacccttc 239  Q
    ||||||||| |||| ||||| ||||||||||||||||| | ||||| ||||| ||||  || ||||| |||||||||||||||||||| | ||||||    
T  13735822 ggtagggtactacagtgcccgtccccatacccgcatttataaaaaaatacccttacccgtgcccgtatcctcgtgggcaacaactttaatccccttc 13735726  T

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Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 239
Target Start/End: Complemental strand, 38695008 - 38694913
Alignment:
Q  144 ggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagtacccttc 239  Q
    ||||||||| || | | |||||||||||| |||||||||| |||| | || |||||  |||||||| |||||||||||| ||||||||| ||||||    
T  38695008 ggtagggtactatagtacccatccccatatccgcatttgtgaaaaatgcctgtacccgtgtccgtaccctcgtgggcaaaaactttagtgcccttc 38694913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 161 - 239
Target Start/End: Complemental strand, 41410435 - 41410357
Alignment:
Q  161 cccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagtacccttc 239  Q
    ||||||||||||||| |||||||||||| |  | |||||   ||||||| |||||||||||||||||||||| ||||||    
T  41410435 cccatccccataccctcatttgtaaaaaatgtctgtacccgagtccgtaccctcgtgggcaacaactttagtgcccttc 41410357  T

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Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 46819058 - 46819168
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| | ||||||| || |||||||||||||||| || ||||||||| || ||| | ||||  ||||| ||  |||||||| ||||||||    
T  46819058 aatgggtacccaatggatagggtactataatgcccatccccatatccacatttgtaagaaatacacatacccgtgtccatactctcgtgggtaacaactt 46819157  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  46819158 tagtgcccttc 46819168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 238
Target Start/End: Complemental strand, 50509070 - 50508972
Alignment:
Q  140 aataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagtaccctt 238  Q
    |||||||| |||| |||||||| |||||||||||||  ||||||||||||||||  || |  || || || |||||||| ||||||||||||| |||||    
T  50509070 aataggtatggtactacaatgcacatccccataccccaatttgtaaaaattaccactatccgtgcccctatcctcgtggacaacaactttagtgccctt 50508972  T

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Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 239
Target Start/End: Complemental strand, 22845319 - 22845228
Alignment:
Q  147 agggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagtacccttc 239  Q
    |||||| |||||||||| |||||||||||| ||||||||||| ||| | ||| | || || |  |||||||||||||| ||||||| ||||||    
T  22845319 agggtactacaatgcccttccccatacccgtatttgtaaaaaatactcatacatgtgcccat-tcctcgtgggcaacagctttagtgcccttc 22845228  T

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Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 232
Target Start/End: Original strand, 49374691 - 49374794
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| |||||| || || | |  |||||||||||||||  |||||||||| |||||||| |  || ||||| |||||||| |||||| ||    
T  49374691 aatgggtacccaatgggtaggatactatagtatccatccccatacccgtgtttgtaaaaaatacccgtatccgtgcccgtatcctcgtggacaacaattt 49374790  T
Q  229 tagt 232  Q
    ||||    
T  49374791 tagt 49374794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 6408517 - 6408575
Alignment:
Q  174 ccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagt 232  Q
    |||||||| |||||| ||||||||||  || || || ||||||||||||||||||||||    
T  6408517 ccgcatttataaaaaatacccgtacccgtgcccctaccctcgtgggcaacaactttagt 6408575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 19454683 - 19454793
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| | ||||||| || | | ||||||||||| || || |||||||||| | | ||||||      |||| ||||||||||||||||||    
T  19454683 aatgggtacccaatggatagggtactatagtacccatccccatgcctgcgtttgtaaaaaatgctcgtacccggactcgtaccctcgtgggcaacaactt 19454782  T
Q  229 tagtacccttc 239  Q
    |||||||||||    
T  19454783 tagtacccttc 19454793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 11671733 - 11671782
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgca 178  Q
    ||||| |||| ||| | ||||||| |||||||||||||||||||||||||    
T  11671733 aatggatacccaatggatagggtactacaatgcccatccccatacccgca 11671782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 239
Target Start/End: Original strand, 43657199 - 43657276
Alignment:
Q  162 ccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagtacccttc 239  Q
    |||||||||||||| | |||||||||| | |||||||   || | ||| |||||||||||||||||||| | ||||||    
T  43657199 ccatccccatacccacgtttgtaaaaaatgcccgtactcgtgcctgtaccctcgtgggcaacaactttattgcccttc 43657276  T

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Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 232
Target Start/End: Original strand, 51055356 - 51055460
Alignment:
Q  128 taatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaact 227  Q
    ||||| |||||  |||| ||||||| |||||||||| || |||| || ||||||||||||| |||  |||||   |  |||| ||| |||||||||||||    
T  51055356 taatgagtaccctatagatagggtactacaatgcccttctccatgcctgcatttgtaaaaaatacatgtacccgagctcgtatccttgtgggcaacaact 51055455  T
Q  228 ttagt 232  Q
    |||||    
T  51055456 ttagt 51055460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 129 - 230
Target Start/End: Original strand, 9477568 - 9477669
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| ||||||||| |||||||| ||||||||||||| ||||||||||||||| |||||| | |||||||| ||||||||||||||||||    
T  9477568 aatgggtacccaatcggtagggtactacaatgctcatccccataccctcatttgtaaaaattatccgtacttgtgtccgtaccctcgtgggcaacaactt 9477667  T
Q  229 ta 230  Q
    ||    
T  9477668 ta 9477669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 16567476 - 16567586
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| ||||||||| |||||||||| ||||||||||||||||| |||||| || |||||||  || ||||| ||||||||||||||||||    
T  16567476 aatgggtacccaatgggtagggtactacaatgcccgtccccatacccgcatttataaaaaatatccgtacccgtgcccgtaccctcgtgggcaacaactt 16567575  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  16567576 tagtccccttc 16567586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 16598186 - 16598076
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| ||||||||| |||||||||| ||||||||||||||||| |||||| || |||||||  || ||||| ||||||||||||||||||    
T  16598186 aatgggtacccaatgggtagggtactacaatgcccgtccccatacccgcatttataaaaaatatccgtacccgtgcccgtaccctcgtgggcaacaactt 16598087  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  16598086 tagtccccttc 16598076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 46181122 - 46181232
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| ||||||||| |||||||||| ||||||||||||||||| |||||| || |||||||  || ||||| ||||||||||||||||||    
T  46181122 aatgggtacccaatgggtagggtactacaatgcccgtccccatacccgcatttataaaaaatatccgtacccgtgcccgtaccctcgtgggcaacaactt 46181221  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  46181222 tagtccccttc 46181232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 19804947 - 19805057
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| ||||||||| |||| ||||| ||| ||||||||||||| |||||| ||||||||||  || ||||| ||||||||| ||||||||    
T  19804947 aatgggtacccaatgggtagggtactacagtgcccgtcctcatacccgcatttataaaaaatacccgtacccgtgcccgtaccctcgtgggtaacaactt 19805046  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  19805047 tagtccccttc 19805057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 129 - 232
Target Start/End: Complemental strand, 33067673 - 33067570
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| | ||||||| ||||||||| |||  ||||||| ||||||||||||||||||||| | ||| || || ||||||||||||||||||    
T  33067673 aatgggtaccaaatggatagggtactacaatgcctatcttcatacccacatttgtaaaaattacccgtatccatgcccataccctcgtgggcaacaactt 33067574  T
Q  229 tagt 232  Q
    ||||    
T  33067573 tagt 33067570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 27398489 - 27398599
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    ||||||| || ||| | ||||||| |||||||||| |||||||||||| |||| |||||| ||||| ||||  || ||||| ||||||||||||||||||    
T  27398489 aatgggtgcccaatggatagggtactacaatgcccgtccccatacccgtatttataaaaaatacccatacccgtgcccgtaccctcgtgggcaacaactt 27398588  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  27398589 tagtccccttc 27398599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 129 - 191
Target Start/End: Complemental strand, 43702607 - 43702545
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaatta 191  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  43702607 aatgggtacccaataggtagggtactacaatgcccatccccatacccacatttgtaaaaatta 43702545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 43224233 - 43224337
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||| ||||| ||| || |||||| |||||||||||||||||||||||||||| |||||||||||||      |||| ||| |||||||| |||||||||    
T  43224233 aatgagtacccaatgggaagggtactacaatgcccatccccatacccgcatttttaaaaattacccg------tgtctgtaccctcgtggacaacaactt 43224326  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  43224327 tagtgcccttc 43224337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 127 - 233
Target Start/End: Original strand, 9223549 - 9223655
Alignment:
Q  127 gtaatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaac 226  Q
    |||||||||||| ||| ||||||||| ||   |  |||||||||||||| | |||||||||| | ||||||||| || ||||| ||||||||||||||||    
T  9223549 gtaatgggtacccaatgggtagggtactattgtatccatccccatacccacgtttgtaaaaaatgcccgtacctgtgcccgtaccctcgtgggcaacaac 9223648  T
Q  227 tttagta 233  Q
    |||||||    
T  9223649 tttagta 9223655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 10066464 - 10066354
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||| ||| ||| |||| |||| |||| ||| | |||| |||||||||||| |||||| |||| |||||  |||||||| ||||||||||||||||||    
T  10066464 aatgggcacccaatgggtatggtactacagtgcgcgtccctatacccgcatttataaaaaatacctgtacccgtgtccgtaccctcgtgggcaacaactt 10066365  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  10066364 tagtccccttc 10066354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 129 - 227
Target Start/End: Original strand, 39414487 - 39414585
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaact 227  Q
    |||||||||| ||| | ||||||| |||||||||| | ||||||||||||||| |||||| ||||||||||  || ||||| | |||||||||||||||    
T  39414487 aatgggtacccaatggatagggtactacaatgcccgttcccatacccgcatttataaaaaatacccgtacccgtgcccgtaccttcgtgggcaacaact 39414585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 232
Target Start/End: Complemental strand, 5023395 - 5023293
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| ||||||||| |||| ||||| ||||||||||||||||| |||||| |||||||||   || || || || |||||||||||||||    
T  5023395 aatgggtacccaatgggtagggtactacagtgcccgtccccatacccgcatttataaaaaatacccgtactcgtgcccttatcc-cgtgggcaacaactt 5023297  T
Q  229 tagt 232  Q
    ||||    
T  5023296 tagt 5023293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 199
Target Start/End: Complemental strand, 5924263 - 5924193
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacc 199  Q
    |||||||||| |||||||||||||||| | | |||||||||||| |||| |||||||||| ||||||||||    
T  5924263 aatgggtacccaataggtagggtattatagtacccatccccatatccgcgtttgtaaaaaatacccgtacc 5924193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 239
Target Start/End: Complemental strand, 48558857 - 48558779
Alignment:
Q  161 cccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagtacccttc 239  Q
    |||||||||||||||||||||||||||| |    |||||| || ||||| |||||||||||||||||||||| ||||||    
T  48558857 cccatccccatacccgcatttgtaaaaaatgttagtacctgtgcccgtaccctcgtgggcaacaactttagtgcccttc 48558779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 31454823 - 31454910
Alignment:
Q  145 gtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagt 232  Q
    |||||||| ||||||| || |||||||| |||||||| |||||| ||| |||||  ||| |||||  |||||||||||||||||||||    
T  31454823 gtagggtactacaatgtccgtccccatatccgcatttataaaaaatactcgtactcatgcccgtattctcgtgggcaacaactttagt 31454910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 127 - 238
Target Start/End: Complemental strand, 40789738 - 40789627
Alignment:
Q  127 gtaatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaac 226  Q
    |||||||||||| ||||| |||||||||| | | ||||||||||||||| |||||||||||| |  | |||||     ||||| |||||||| |||||||    
T  40789738 gtaatgggtacccaatagatagggtattatagtacccatccccataccctcatttgtaaaaaatgtctgtacccgaacccgtaccctcgtggacaacaac 40789639  T
Q  227 tttagtaccctt 238  Q
    |||||| |||||    
T  40789638 tttagtgccctt 40789627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 129 - 232
Target Start/End: Original strand, 42284414 - 42284517
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    ||||||||  |||| ||||||||| |||||||||||| |||||||| | |||| ||||||||| | ||||   || |||||  |||||||||||||||||    
T  42284414 aatgggtatttaatgggtagggtactacaatgcccattcccatacctgtatttttaaaaattatctgtactcgtgcccgtactctcgtgggcaacaactt 42284513  T
Q  229 tagt 232  Q
    ||||    
T  42284514 tagt 42284517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 232
Target Start/End: Complemental strand, 9355367 - 9355264
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| ||||||||| || | |  |||||| ||||||| | |||||||||| ||| |||||   || ||||| ||||||||||||||||||    
T  9355367 aatgggtacccaatgggtagggtactatagtatccatcctcatacccacgtttgtaaaaaatactcgtacacgtgcccgtaccctcgtgggcaacaactt 9355268  T
Q  229 tagt 232  Q
    ||||    
T  9355267 tagt 9355264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 239
Target Start/End: Complemental strand, 1876216 - 1876138
Alignment:
Q  161 cccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagtacccttc 239  Q
    ||||||||||||||||| |||||||||| ||| ||||||     ||||| | |||||||||||||||||||| ||||||    
T  1876216 cccatccccatacccgcgtttgtaaaaaatactcgtacccggacccgtaccatcgtgggcaacaactttagtgcccttc 1876138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 17172424 - 17172314
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| | ||||||| || | |  |||||||||||||| |||||||||||| |  |||||||   | ||||| ||||||||||||||||||    
T  17172424 aatgggtacccaatggatagggtactatagtatccatccccataccctcatttgtaaaaaatgtccgtacccgagcccgtaccctcgtgggcaacaactt 17172325  T
Q  229 tagtacccttc 239  Q
    || | ||||||    
T  17172324 taatgcccttc 17172314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 44300622 - 44300732
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| | ||||||| || | | ||||||||||||  | |||||||||||| |  |||||||   | ||||| ||||||||||||||||||    
T  44300622 aatgggtacccaatggatagggtactatagtacccatccccataagctcatttgtaaaaaatgtccgtacccgagcccgtaccctcgtgggcaacaactt 44300721  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  44300722 tagtgcccttc 44300732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 199
Target Start/End: Original strand, 46782997 - 46783067
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacc 199  Q
    |||||||||| ||| | ||||||| |||| ||||| ||||||||||||||||| |||||| ||| ||||||    
T  46782997 aatgggtacccaatggttagggtactacagtgcccgtccccatacccgcatttataaaaaatacacgtacc 46783067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 198
Target Start/End: Complemental strand, 35092918 - 35092849
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtac 198  Q
    ||||||| | |||| ||||||||| |||| ||||| ||||||||||||||||| |||||| ||| |||||    
T  35092918 aatgggtgcttaatgggtagggtactacagtgcccgtccccatacccgcatttataaaaaatactcgtac 35092849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 239
Target Start/End: Complemental strand, 38470092 - 38470014
Alignment:
Q  161 cccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagtacccttc 239  Q
    ||||||||||||| ||| |||||||||| |    |||||   ||||||| ||||||||||||||| |||||||||||||    
T  38470092 cccatccccatactcgcgtttgtaaaaaatgtttgtacccgagtccgtatcctcgtgggcaacaattttagtacccttc 38470014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 226
Target Start/End: Complemental strand, 3551738 - 3551641
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaac 226  Q
    ||||||||||  ||| |||||||| |||| | ||| ||| |||||||| ||||||||||| |||| ||||| ||| | ||| | |||||| |||||||    
T  3551738 aatgggtaccctataagtagggtactacagtacccttcctcatacccgtatttgtaaaaaatacctgtacccatgcctgtatcttcgtggacaacaac 3551641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 198
Target Start/End: Complemental strand, 28067444 - 28067407
Alignment:
Q  161 cccatccccatacccgcatttgtaaaaattacccgtac 198  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  28067444 cccatccccatacccgcgtttgtaaaaaatacccgtac 28067407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 239
Target Start/End: Complemental strand, 34152529 - 34152452
Alignment:
Q  162 ccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagtacccttc 239  Q
    |||||||||||||||| ||||| |||| |  | |||||  |||| ||| |||||||||||| ||||||||| ||||||    
T  34152529 ccatccccatacccgcgtttgttaaaaatgtctgtacccgtgtctgtaccctcgtgggcaataactttagtgcccttc 34152452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 239
Target Start/End: Original strand, 34174595 - 34174672
Alignment:
Q  162 ccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagtacccttc 239  Q
    |||||||||||||||| ||||| |||| |  | |||||  |||| ||| |||||||||||| ||||||||| ||||||    
T  34174595 ccatccccatacccgcgtttgttaaaaatgtctgtacccgtgtctgtaccctcgtgggcaataactttagtgcccttc 34174672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 239
Target Start/End: Original strand, 26299060 - 26299172
Alignment:
Q  127 gtaatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaac 226  Q
    |||||||||||  ||| ||||||||| || | |  ||||| |||||| ||| |||||||||| | |||||||   || ||||| |||||||| |||||||    
T  26299060 gtaatgggtactcaatgggtagggtactatagtatccatctccatactcgcgtttgtaaaaaatgcccgtactcgtgcccgtaccctcgtggacaacaac 26299159  T
Q  227 tttagtacccttc 239  Q
    ||| || ||||||    
T  26299160 tttggtgcccttc 26299172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 36074295 - 36074219
Alignment:
Q  163 catccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagtacccttc 239  Q
    |||||| ||||| || |||||||||||| |||||||   || ||||| | ||||||| |||||||||||| ||||||    
T  36074295 catccctatacctgcgtttgtaaaaattgcccgtactcgtgcccgtaccttcgtgggtaacaactttagtgcccttc 36074219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 129 - 232
Target Start/End: Complemental strand, 3387414 - 3387311
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| ||||||||| |||||||||| ||||||||||||||||| |||||| ||||||||||  || ||||| ||||||||||||||||||    
T  3387414 aatgggtacccaatgggtagggtactacaatgcccgtccccatacccgcatttataaaaaatacccgtacccgtgcccgtaccctcgtgggcaacaactt 3387315  T
Q  229 tagt 232  Q
    ||||    
T  3387314 tagt 3387311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 12185691 - 12185801
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| ||||||||| |||| ||||| ||||||||||||||||| |||||| ||||||||||  || ||||| ||||||||||||||||||    
T  12185691 aatgggtacccaatgggtagggtactacagtgcccgtccccatacccgcatttataaaaaatacccgtacccgtgcccgtaccctcgtgggcaacaactt 12185790  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  12185791 tagtccccttc 12185801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 12187683 - 12187793
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| ||||||||| |||| ||||| ||||||||||||||||| |||||| ||||||||||  || ||||| ||||||||||||||||||    
T  12187683 aatgggtacccaatgggtagggtactacagtgcccgtccccatacccgcatttataaaaaatacccgtacccgtgcccgtaccctcgtgggcaacaactt 12187782  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  12187783 tagtccccttc 12187793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 14576704 - 14576814
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| |||||||||||||| ||||| ||||||||||||||||| |||||| ||||||||||  || ||||| ||||||||||||||| ||    
T  14576704 aatgggtacccaatgggtagggtattacagtgcccgtccccatacccgcatttataaaaaatacccgtacccgtgcccgtaccctcgtgggcaacaattt 14576803  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  14576804 tagtccccttc 14576814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 42053466 - 42053356
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| ||||||||| |||||||||| ||||||||||||||||| |||||| || |||||||  || ||||| ||||||||||||||||||    
T  42053466 aatgggtacccaatgggtagggtactacaatgcccgtccccatacccgcatttataaaaaatatccgtacccgtgcccgtaccctcgtgggcaacaactt 42053367  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  42053366 tagtccccttc 42053356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 29149214 - 29149104
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| | ||||||| |||||||||| ||||||||||||||||| |||||| || |||||||  || ||||| ||||||||||||||||||    
T  29149214 aatgggtacccaatggatagggtactacaatgcccgtccccatacccgcatttataaaaaatatccgtaccagtgcccgtaccctcgtgggcaacaactt 29149115  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  29149114 tagtccccttc 29149104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 32655720 - 32655610
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| ||||||||| ||||||| || ||||||||||||||||| |||||| || |||||||  || ||||| ||||||||||||||||||    
T  32655720 aatgggtacccaatgggtagggtactacaatgtccgtccccatacccgcatttataaaaaatatccgtacccgtgcccgtaccctcgtgggcaacaactt 32655621  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  32655620 tagtccccttc 32655610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 52180976 - 52180866
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| ||||||||| ||||||| || ||||||||||||||||| |||||| || |||||||  || ||||| ||||||||||||||||||    
T  52180976 aatgggtacccaatgggtagggtactacaatgtccgtccccatacccgcatttataaaaaatatccgtacccgtgcccgtaccctcgtgggcaacaactt 52180877  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  52180876 tagtccccttc 52180866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 42755253 - 42755363
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| ||||||||| |||| ||||| ||||||||||| ||||| |||||| ||||||||||  || ||||| ||||||||| ||||||||    
T  42755253 aatgggtacccaatgggtagggtactacactgcccgtccccataccctcatttataaaaaatacccgtacccgtgcccgtaccctcgtgggtaacaactt 42755352  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  42755353 tagtccccttc 42755363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 129 - 232
Target Start/End: Complemental strand, 34459829 - 34459726
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||||||||||||| || ||||||||||| ||||||||||||| ||||||||| | ||| |  || ||||| ||||||| ||||||||||    
T  34459829 aatgggtacccaataggtagggtactataatgcccatcctcatacccgcatttttaaaaattatctgtatccgtgcccgtaccctcgtgtgcaacaactt 34459730  T
Q  229 tagt 232  Q
    ||||    
T  34459729 tagt 34459726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 129 - 232
Target Start/End: Original strand, 46080630 - 46080733
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| | ||||||| || | | || |||||||||||| |||||||||||| | ||||||||| |||||||| ||||||||||||||||||    
T  46080630 aatgggtacccaatggatagggtactatagtaccaatccccataccctcatttgtaaaaaatgcccgtacctgtgtccgtagcctcgtgggcaacaactt 46080729  T
Q  229 tagt 232  Q
    ||||    
T  46080730 tagt 46080733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 144 - 238
Target Start/End: Original strand, 29994247 - 29994341
Alignment:
Q  144 ggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagtaccctt 238  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||| ||| |  ||  |||| | |||||||||||||||||||| |||||    
T  29994247 ggtagggtactacaatgcccatccccatacccacatttgtaaaaattacctgtagccgtgctcgtaccttcgtgggcaacaactttagtgccctt 29994341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 140 - 238
Target Start/End: Original strand, 33983060 - 33983158
Alignment:
Q  140 aataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagtaccctt 238  Q
    ||||||||||||| ||||||||||||| | ||| | |||||| ||||||||||| |||||  |||||||| |||||||||||| ||||||||| |||||    
T  33983060 aataggtagggtactacaatgcccatctctatatctgcatttttaaaaattacctgtacccgtgtccgtaccctcgtgggcaataactttagtgccctt 33983158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 144 - 239
Target Start/End: Complemental strand, 7250691 - 7250596
Alignment:
Q  144 ggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagtacccttc 239  Q
    ||||||||| |||||||| ||||| |||||||||||||||||||||||| | || | ||||||||| |||| | | ||||||||||||| ||||||    
T  7250691 ggtagggtactacaatgctcatccacatacccgcatttgtaaaaattactcatatccatgtccgtaccctcattgacaacaactttagtgcccttc 7250596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 22313538 - 22313450
Alignment:
Q  144 ggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagt 232  Q
    ||||||||| ||||||||||||||||||| ||||||||  |||||||||| |||||  || ||||| |||| |||| ||||||||||||    
T  22313538 ggtagggtactacaatgcccatccccatatccgcattttaaaaaattacctgtacccgtgcccgtaccctcatgggaaacaactttagt 22313450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 11034608 - 11034718
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| || |||||| || | | |||||||||||||| || |||||||||| ||||||||||     ||||| ||||||||||||||||||    
T  11034608 aatgggtacccaatgggcagggtactatagtacccatccccatacctgcgtttgtaaaaaatacccgtacccggacccgtaccctcgtgggcaacaactt 11034707  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  11034708 tagtgcccttc 11034718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 21075742 - 21075852
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| | ||||||| |||| ||||| ||||||||||||||||| |||||| |||  |||||  || ||||| ||||||||||||||  ||    
T  21075742 aatgggtacccaatggatagggtactacagtgcccgtccccatacccgcatttataaaaaatacttgtacccgtgcccgtaccctcgtgggcaacatttt 21075841  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  21075842 tagtccccttc 21075852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 28234370 - 28234260
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| | ||||||| || | |  ||||||||||||||||||||||||||| |  |||||||  || ||||| |||||||| |||||||||    
T  28234370 aatgggtacccaatggatagggtactatagtatccatccccatacccgcatttgtaaaaaatgtccgtacccgtgcccgtaccctcgtggacaacaactt 28234271  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  28234270 tagtgcccttc 28234260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 146 - 239
Target Start/End: Complemental strand, 2073793 - 2073700
Alignment:
Q  146 tagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagtacccttc 239  Q
    ||||||| |||||||| |||| |||||||||||||| |||||||||||||||    ||   ||| |||||||||||||||||||||| ||||||    
T  2073793 tagggtactacaatgctcatctccatacccgcatttataaaaattacccgtattcgtgcttgtatcctcgtgggcaacaactttagtgcccttc 2073700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 232
Target Start/End: Original strand, 52595472 - 52595560
Alignment:
Q  144 ggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagt 232  Q
    |||| |||| ||||||| || ||||||||||||||||| |||||| || ||||| |  || ||||| ||||||||||||||||||||||    
T  52595472 ggtacggtactacaatgtccgtccccatacccgcatttataaaaaatatccgtatccgtgcccgtaccctcgtgggcaacaactttagt 52595560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 199
Target Start/End: Original strand, 22829662 - 22829732
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacc 199  Q
    |||||||||| ||| ||||||||| || | | ||||||||||||||||| |||||||||| ||||||||||    
T  22829662 aatgggtacccaatgggtagggtactatagtacccatccccatacccgcgtttgtaaaaaatacccgtacc 22829732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 23147351 - 23147429
Alignment:
Q  154 tacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagt 232  Q
    |||||||||| ||||||||||||||||| |||||| || |||||||  || ||||| | |||||||||| |||||||||    
T  23147351 tacaatgcccgtccccatacccgcatttataaaaaatatccgtacccgtgcccgtaccttcgtgggcaagaactttagt 23147429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 29406071 - 29405961
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| | ||||||| || | | ||||||||||||||| |||||||||||| | | ||||||   |  |||| ||||||||||||||||||    
T  29406071 aatgggtacccaatggatagggtactatagtacccatccccataccctcatttgtaaaaaatgctcgtacccgagctcgtaccctcgtgggcaacaactt 29405972  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  29405971 tagtgcccttc 29405961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 2225157 - 2225045
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaat--tacccgtacctatgtccgtaacctcgtgggcaacaac 226  Q
    ||||||||| |||| ||||||||| |||| ||||| ||| |||||||| |||| ||||||   ||||||||||  || ||||| | |||||||||||||     
T  2225157 aatgggtacttaatgggtagggtactacagtgcccgtccacatacccgtatttataaaaaaaatacccgtacccgtgcccgtaccttcgtgggcaacaat 2225058  T
Q  227 tttagtacccttc 239  Q
    |||||| ||||||    
T  2225057 tttagtccccttc 2225045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 8806090 - 8806014
Alignment:
Q  163 catccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagtacccttc 239  Q
    ||||||||||||||| |||||||||| | ||||||||  |  ||||| ||||||||| |||||||||||| ||||||    
T  8806090 catccccatacccgcgtttgtaaaaaatgcccgtacccgtacccgtaccctcgtgggtaacaactttagtgcccttc 8806014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 188
Target Start/End: Complemental strand, 3098115 - 3098056
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaa 188  Q
    |||||||||||||| | ||||||| |||||||||| ||||||||| ||||||| ||||||    
T  3098115 aatgggtacctaatggatagggtactacaatgcccgtccccatactcgcatttataaaaa 3098056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 232
Target Start/End: Original strand, 8065877 - 8065980
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||| | ||| ||||||||| |||| |||||||||||||| | |||||| |||||| ||| ||||||  || ||||| || || || |||||||||    
T  8065877 aatgggtatccaatgggtagggtactacagtgcccatccccatatctgcatttataaaaaatactcgtacccgtgcccgtacccacgcggacaacaactt 8065976  T
Q  229 tagt 232  Q
    ||||    
T  8065977 tagt 8065980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 239
Target Start/End: Original strand, 25938276 - 25938387
Alignment:
Q  128 taatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaact 227  Q
    ||||||||| | ||| ||||||||| ||||||| || | |||||||||| |||| |||||| || ||||| |  || | ||| |||||||| ||||||||    
T  25938276 taatgggtatccaattggtagggtactacaatgtccgttcccatacccgtatttataaaaaatatccgtatccgtgcctgtatcctcgtggacaacaact 25938375  T
Q  228 ttagtacccttc 239  Q
    ||||| ||||||    
T  25938376 ttagtccccttc 25938387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 232
Target Start/End: Complemental strand, 54932926 - 54932823
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||| | ||| |||||||||  ||| ||||| |||||||| |||||||| |||||| ||| | ||||  ||  |||| ||||||||||||||||||    
T  54932926 aatgggtatccaatgggtagggtacaacagtgcccgtccccatatccgcatttataaaaaatactcatacccgtgcacgtatcctcgtgggcaacaactt 54932827  T
Q  229 tagt 232  Q
    ||||    
T  54932826 tagt 54932823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 188
Target Start/End: Complemental strand, 54979340 - 54979281
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaa 188  Q
    |||||||||| ||| ||||||||| |||||||||| |||||||||||| |||| ||||||    
T  54979340 aatgggtacccaatgggtagggtactacaatgcccgtccccatacccgtatttataaaaa 54979281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 231
Target Start/End: Complemental strand, 1758178 - 1758076
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||| | ||| ||||||||| || | |||||||| |||||||| ||||||||| || | ||| ||||  || ||||| | ||||||||||||||||    
T  1758178 aatgggtatccaatgggtagggtactatagtgcccatctccatacccacatttgtaagaaatgcccatacccgtgcccgtaccttcgtgggcaacaactt 1758079  T
Q  229 tag 231  Q
    |||    
T  1758078 tag 1758076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 53140523 - 53140633
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| | ||||||| || | |  |||||||||||||| |||||||||||| |  |||||||   | ||||| ||||||||||||||||||    
T  53140523 aatgggtacccaatggatagggtactatagtatccatccccataccctcatttgtaaaaaatgtccgtacccgagcccgtaccctcgtgggcaacaactt 53140622  T
Q  229 tagtacccttc 239  Q
    || | ||||||    
T  53140623 taatgcccttc 53140633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 239
Target Start/End: Original strand, 652195 - 652267
Alignment:
Q  167 cccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagtacccttc 239  Q
    ||||||||||||||| |||||| ||||||||||  || ||||| | ||||||||||||||  |||| ||||||    
T  652195 cccatacccgcatttataaaaaatacccgtacccgtgcccgtaccttcgtgggcaacaacaatagtccccttc 652267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 50982131 - 50982043
Alignment:
Q  144 ggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagt 232  Q
    |||||||||||| | | ||| ||||||||| | | |||||||||| |||||||||| | || |||| |||||||| ||||| |||||||    
T  50982131 ggtagggtattatagtacccttccccatactcacgtttgtaaaaaatacccgtacccaagttcgtaccctcgtggacaacatctttagt 50982043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 230
Target Start/End: Complemental strand, 27586767 - 27586681
Alignment:
Q  144 ggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaacttta 230  Q
    ||||||||| |||||||||| ||||  ||||  |||||||||||| ||||| ||||  || ||||| | ||||||| ||||||||||    
T  27586767 ggtagggtactacaatgcccttccctgtacctacatttgtaaaaaatacccttacccgtgcccgtaccttcgtggggaacaacttta 27586681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 240671 - 240561
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| |||||||||||||| ||||| ||||||||||||||||| |||||| ||||||||||  || ||||| ||||||||||||||| ||    
T  240671 aatgggtacccaatgggtagggtattacagtgcccgtccccatacccgcatttataaaaaatacccgtacccgtgcccgtaccctcgtgggcaacaattt 240572  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  240571 tagtccccttc 240561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 129 - 238
Target Start/End: Complemental strand, 24891624 - 24891514
Alignment:
Q  129 aatgggtacctaataggtagggtattacaa-tgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaact 227  Q
    |||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||  ||  |||| | |||||| ||||||||    
T  24891624 aatgggtacctaatgggtagggtactacaaatgcccatccccatacccgcatttgtaaaaattactcgtacccgtgctcgtaccgtcgtggacaacaact 24891525  T
Q  228 ttagtaccctt 238  Q
    |||||||||||    
T  24891524 ttagtaccctt 24891514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 2621151 - 2621063
Alignment:
Q  144 ggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagt 232  Q
    ||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||   |||||||| ||||||||||||||||||||||    
T  2621151 ggtagggtactacaatgcccattcccatacccgcatttttaaaaattacccgtactcgtgtccgtaccctcgtgggcaacaactttagt 2621063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 127 - 239
Target Start/End: Complemental strand, 19643721 - 19643609
Alignment:
Q  127 gtaatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaac 226  Q
    |||||||||||| ||| ||||||||| || ||||| |||| ||||||| ||||||||||||||||||||||||  || ||||| | ||||||||||||||    
T  19643721 gtaatgggtacccaatgggtagggtactataatgctcatctccatacctgcatttgtaaaaattacccgtacccgtgcccgtaccttcgtgggcaacaac 19643622  T
Q  227 tttagtacccttc 239  Q
    |||||| ||||||    
T  19643621 tttagtgcccttc 19643609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 24789415 - 24789525
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| ||||||||| |||||||||| ||| ||||||||||||| |||||| ||||||||||  || ||||| | ||||||||||||||||    
T  24789415 aatgggtaccaaatgggtagggtactacaatgcccgtcctcatacccgcatttataaaaaatacccgtacccgtgcccgtaccttcgtgggcaacaactt 24789514  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  24789515 tagtccccttc 24789525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 129 - 232
Target Start/End: Complemental strand, 2472486 - 2472383
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||| | ||| ||||||||| ||||||||||||| |||||||||||||||||||||||| || || |  || ||||| |||||||| |||||||||    
T  2472486 aatgggtatccaatgggtagggtactacaatgcccatctccatacccgcatttgtaaaaattatccatatccgtgcccgtaccctcgtggacaacaactt 2472387  T
Q  229 tagt 232  Q
    ||||    
T  2472386 tagt 2472383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 3617070 - 3616960
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    ||||||| || ||| ||||||||| || | ||||| ||||||||||||||||| |||||| ||| ||||||  || ||||| ||||||||||||||||||    
T  3617070 aatgggtgcccaatgggtagggtactatagtgcccgtccccatacccgcatttataaaaaatactcgtacccgtgcccgtaccctcgtgggcaacaactt 3616971  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  3616970 tagtccccttc 3616960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 129 - 196
Target Start/End: Original strand, 1667171 - 1667238
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgt 196  Q
    |||||||||| ||| ||||||||| |||||||||||||||||||||||||||| | ||||||||||||    
T  1667171 aatgggtaccaaatgggtagggtactacaatgcccatccccatacccgcatttattaaaattacccgt 1667238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 140 - 239
Target Start/End: Original strand, 25500060 - 25500159
Alignment:
Q  140 aataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagtacccttc 239  Q
    ||||||||||||| || |||||||||||| | ||||||||||||||| |||||||||||   || |||||   |||||| ||||||||||||||||||||    
T  25500060 aataggtagggtactataatgcccatcccgaaacccgcatttgtaaatattacccgtactcgtgcccgtactgtcgtggacaacaactttagtacccttc 25500159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 170 - 239
Target Start/End: Complemental strand, 26561392 - 26561323
Alignment:
Q  170 atacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagtacccttc 239  Q
    |||||| |||||||||||| ||||||||| | ||||||||  ||||||||||||||||||||| ||||||    
T  26561392 atacccacatttgtaaaaaatacccgtacatttgtccgtattctcgtgggcaacaactttagtgcccttc 26561323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 129 - 232
Target Start/End: Original strand, 6109525 - 6109628
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    ||||||||||||||   ||||||| ||||||| ||||||||||||| |||||| | ||||||||  ||| |  ||| |||| | ||||||||||||||||    
T  6109525 aatgggtacctaatgcatagggtactacaatgtccatccccatacctgcatttattaaaattacttgtatccgtgttcgtatcttcgtgggcaacaactt 6109624  T
Q  229 tagt 232  Q
    ||||    
T  6109625 tagt 6109628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 7579960 - 7580070
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||| ||| ||| ||||||||| || | | ||||||||||||||||  |||||||||| |  |||||||  || ||||| ||||||||| ||||||||    
T  7579960 aatgggcacccaatgggtagggtactatagtacccatccccatacccgtgtttgtaaaaaatggccgtacccgtgcccgtaccctcgtgggtaacaactt 7580059  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  7580060 tagtgcccttc 7580070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 226
Target Start/End: Original strand, 30801150 - 30801248
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaat-tacccgtacctatgtccgtaacctcgtgggcaacaac 226  Q
    ||||||||||  |||| ||||||| || | ||||| | |||||||||| |||||||||||  ||||||||||| |||||||| ||||| ||||||||||    
T  30801150 aatgggtaccctatagatagggtactatagtgccctttcccatacccgtatttgtaaaaaaatacccgtacctgtgtccgtaccctcgagggcaacaac 30801248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 232
Target Start/End: Original strand, 1376087 - 1376191
Alignment:
Q  128 taatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaact 227  Q
    ||||||||||| ||| |||||| || |||| ||||  |||| ||||| |||||| |||||| ||| ||||||  || ||||| | |||||||||||||||    
T  1376087 taatgggtacccaatgggtaggatactacagtgccggtccctatacctgcatttataaaaaatactcgtacccgtgcccgtaccttcgtgggcaacaact 1376186  T
Q  228 ttagt 232  Q
    |||||    
T  1376187 ttagt 1376191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 232
Target Start/End: Complemental strand, 37226978 - 37226875
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    ||||| |||| ||| ||||||||| |||| | ||| |||||||||||||||||||||||| | ||||||||   | | ||| |||| |||| ||||||||    
T  37226978 aatggatacccaatgggtagggtactacagtacccttccccatacccgcatttgtaaaaaatgcccgtacccgagcctgtaccctcctgggtaacaactt 37226879  T
Q  229 tagt 232  Q
    ||||    
T  37226878 tagt 37226875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 232
Target Start/End: Original strand, 221883 - 221989
Alignment:
Q  127 gtaatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaat-tacccgtacctatgtccgtaacctcgtgggcaacaa 225  Q
    |||||||||||| ||| |||||||||||| | |  ||||| |||||||||| ||||||||||  || |||||||     ||||| |||||||||||||||    
T  221883 gtaatgggtacccaatgggtagggtattatagtatccatctccatacccgcgtttgtaaaaaaatatccgtacccgaacccgtaccctcgtgggcaacaa 221982  T
Q  226 ctttagt 232  Q
    |||||||    
T  221983 ctttagt 221989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 232
Target Start/End: Original strand, 691038 - 691144
Alignment:
Q  127 gtaatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaat-tacccgtacctatgtccgtaacctcgtgggcaacaa 225  Q
    |||||||||||| ||| |||||||||||| | |  ||||| |||||||||| ||||||||||  || |||||||     ||||| |||||||||||||||    
T  691038 gtaatgggtacccaatgggtagggtattatagtatccatctccatacccgcgtttgtaaaaaaatatccgtacccgaacccgtaccctcgtgggcaacaa 691137  T
Q  226 ctttagt 232  Q
    |||||||    
T  691138 ctttagt 691144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 232
Target Start/End: Original strand, 735506 - 735612
Alignment:
Q  127 gtaatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaat-tacccgtacctatgtccgtaacctcgtgggcaacaa 225  Q
    |||||||||||| ||| |||||||||||| | |  ||||| |||||||||| ||||||||||  || |||||||     ||||| |||||||||||||||    
T  735506 gtaatgggtacccaatgggtagggtattatagtatccatctccatacccgcgtttgtaaaaaaatatccgtacccgaacccgtaccctcgtgggcaacaa 735605  T
Q  226 ctttagt 232  Q
    |||||||    
T  735606 ctttagt 735612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 232
Target Start/End: Original strand, 859402 - 859508
Alignment:
Q  127 gtaatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaat-tacccgtacctatgtccgtaacctcgtgggcaacaa 225  Q
    |||||||||||| ||| |||||||||||| | |  ||||| |||||||||| ||||||||||  || |||||||     ||||| |||||||||||||||    
T  859402 gtaatgggtacccaatgggtagggtattatagtatccatctccatacccgcgtttgtaaaaaaatatccgtacccgaacccgtaccctcgtgggcaacaa 859501  T
Q  226 ctttagt 232  Q
    |||||||    
T  859502 ctttagt 859508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 20216110 - 20216220
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| | ||||||| || | | ||||||||||||  | |||||||||||| |  |||||||   | ||||| ||||||||||||||||||    
T  20216110 aatgggtacccaatggatagggtactatagtacccatccccataagctcatttgtaaaaaatgtccgtacccgagcccgtaccctcgtgggcaacaactt 20216209  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  20216210 tagtgcccttc 20216220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 20235708 - 20235818
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| | ||||||| || | | ||||||||||||  | |||||||||||| |  |||||||   | ||||| ||||||||||||||||||    
T  20235708 aatgggtacccaatggatagggtactatagtacccatccccataagctcatttgtaaaaaatgtccgtacccgagcccgtaccctcgtgggcaacaactt 20235807  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  20235808 tagtgcccttc 20235818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 239
Target Start/End: Original strand, 38019983 - 38020061
Alignment:
Q  161 cccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagtacccttc 239  Q
    ||||||||||||||||| |||||||||| ||| |||||  | | ||||| |||||||| |||| |||||||| ||||||    
T  38019983 cccatccccatacccgcgtttgtaaaaaatactcgtactcaggcccgtaccctcgtggacaactactttagtgcccttc 38020061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 29528375 - 29528331
Alignment:
Q  144 ggtagggtattacaatgcccatccccatacccgcatttgtaaaaa 188  Q
    |||||||||||||| ||||| || ||||| |||||||||||||||    
T  29528375 ggtagggtattacagtgcccttctccatatccgcatttgtaaaaa 29528331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 129 - 232
Target Start/End: Complemental strand, 13534393 - 13534289
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgt-aaaaattacccgtacctatgtccgtaacctcgtgggcaacaact 227  Q
    |||||||||| ||| ||||||||| |||||||||||||||||||||||||||| | ||||| |||| |||||  |||||||| |||||||||||||||||    
T  13534393 aatgggtacccaatgggtagggtactacaatgcccatccccatacccgcatttataaaaaaatacctgtacccgtgtccgtaccctcgtgggcaacaact 13534294  T
Q  228 ttagt 232  Q
    |||||    
T  13534293 ttagt 13534289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 129 - 199
Target Start/End: Original strand, 6937966 - 6938036
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacc 199  Q
    ||||||||||  || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6937966 aatgggtaccctatgggtagggtactacaatgcccatccccatacccgcatttgtaaaaattacccgtacc 6938036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 33331510 - 33331620
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| | ||||||| ||||||| || || |||||||||||||| |||||| ||||||||||  || ||||| ||| ||||||||||||||    
T  33331510 aatgggtacccaatggatagggtactacaatgtccgtctccatacccgcatttataaaaaatacccgtacccgtgcccgtacccttgtgggcaacaactt 33331609  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  33331610 tagtccccttc 33331620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 20691789 - 20691679
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||| ||| ||| ||||||||| |||| ||||| ||||  || |||||||| |||||| || |||||||  |||||||| ||||||||||||||||||    
T  20691789 aatgggcacccaatgggtagggtactacagtgcccgtccctctatccgcatttataaaaaatatccgtacccgtgtccgtaccctcgtgggcaacaactt 20691690  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  20691689 tagtccccttc 20691679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 162 - 239
Target Start/End: Complemental strand, 9062313 - 9062236
Alignment:
Q  162 ccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagtacccttc 239  Q
    |||||||||||||||| |||||||||| | ||||||||  |||||||| |||||||| ||||||||||||| ||||||    
T  9062313 ccatccccatacccgcgtttgtaaaaaatgcccgtacccgtgtccgtaccctcgtggacaacaactttagtgcccttc 9062236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 232
Target Start/End: Original strand, 6337143 - 6337246
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| ||||||||| || | ||||||||||||||||| ||||||||| || || || ||||  ||  |||| ||||||||||||||||||    
T  6337143 aatgggtacccaatgggtagggtactatagtgcccatccccatacccacatttgtaagaaatatccatacccgtgctcgtaccctcgtgggcaacaactt 6337242  T
Q  229 tagt 232  Q
    ||||    
T  6337243 tagt 6337246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 232
Target Start/End: Original strand, 12429333 - 12429436
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| |||  |||||| | ||||||||||||| ||| ||||| ||||||||||||||  |||||  ||||| ||| ||||||||||||| ||||    
T  12429333 aatgggtacccaatgagtaggggactacaatgcccatctccaaacccgtatttgtaaaaattattcgtactcatgtctgtaccctcgtgggcaactactt 12429432  T
Q  229 tagt 232  Q
    ||||    
T  12429433 tagt 12429436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 1329762 - 1329652
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||| | ||| || |||||| |||| || || ||||||||||||||||| |||||| ||| ||||||  || || || ||||||||||||||||||    
T  1329762 aatgggtatccaatgggcagggtactacagtgtccgtccccatacccgcatttataaaaaatactcgtacccgtgcccttaccctcgtgggcaacaactt 1329663  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  1329662 tagtccccttc 1329652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 33328498 - 33328608
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| | ||||||| ||||||| || || |||||||||||||| |||||| || | |||||  || ||||| ||| ||||||||||||||    
T  33328498 aatgggtacccaatggatagggtactacaatgtccgtctccatacccgcatttataaaaaatatctgtacccgtgcccgtacccttgtgggcaacaactt 33328597  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  33328598 tagtccccttc 33328608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 239
Target Start/End: Complemental strand, 31784158 - 31784063
Alignment:
Q  144 ggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagtacccttc 239  Q
    ||||||||| |||||||||| ||| ||||||||||||| |||||| ||| |||||   || ||||| ||||||  |||||||||||||| ||||||    
T  31784158 ggtagggtactacaatgcccgtcctcatacccgcatttataaaaaatacacgtacacgtgcccgtaccctcgtacgcaacaactttagtccccttc 31784063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 6799626 - 6799516
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| |||| |||| || | |  |||||||||||||||| |||||||||| | ||||||||  |  ||||| |||||||||||||| |||    
T  6799626 aatgggtacccaatgggtaaggtactatagtatccatccccatacccgcgtttgtaaaaaatgcccgtacccgtacccgtaccctcgtgggcaacatctt 6799527  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  6799526 tagtgcccttc 6799516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 6338136 - 6338026
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||||||| || |||| |||| ||| | |||| |||||||||| |||||||||| ||| ||||     | || || ||||||||||||||||||    
T  6338136 aatgggtacctaatgggcagggaattataatactcatctccatacccgcgtttgtaaaaaatacacgtattcgggcccataccctcgtgggcaacaactt 6338037  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  6338036 tagtgcccttc 6338026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 24447325 - 24447215
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| | ||||||| || | |  |||||||||||||| |||||||||||| |  |||||||   | ||||| ||||||||||||||||||    
T  24447325 aatgggtacccaatggatagggtactatagtatccatccccataccctcatttgtaaaaaatgtccgtacccgagcccgtaccctcgtgggcaacaactt 24447226  T
Q  229 tagtacccttc 239  Q
    || | ||||||    
T  24447225 taatgcccttc 24447215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 29641638 - 29641550
Alignment:
Q  144 ggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagt 232  Q
    ||||||||| ||||  | || |||||||| |||||||| |||||| ||||| ||||  || ||||| |||||||| |||||||||||||    
T  29641638 ggtagggtactacagcgtccgtccccatatccgcatttataaaaaatacccatacccgtgcccgtaccctcgtggacaacaactttagt 29641550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 188
Target Start/End: Complemental strand, 21455618 - 21455575
Alignment:
Q  145 gtagggtattacaatgcccatccccatacccgcatttgtaaaaa 188  Q
    |||||||| ||||||| || ||||||||||||||||||||||||    
T  21455618 gtagggtactacaatgtccttccccatacccgcatttgtaaaaa 21455575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 26331 - 26221
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactt 228  Q
    |||||||||| ||| | ||||||| || | | ||||||||||||||||| |||||||||| |||||||| |     ||||| ||||||||||||||||||    
T  26331 aatgggtacccaatggatagggtactatagtacccatccccatacccgcgtttgtaaaaaatacccgtatccgaacccgtaccctcgtgggcaacaactt 26232  T
Q  229 tagtacccttc 239  Q
    |||| ||||||    
T  26231 tagtgcccttc 26221  T

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Target: scaffold0312 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 231
Target Start/End: Complemental strand, 6078 - 5974
Alignment:
Q  129 aatgggtacctaataggtagggtattacaatgcccatccccatacccgcatttgtaaaaat--tacccgtacctatgtccgtaacctcgtgggcaacaac 226  Q
    |||||||||| ||| | ||||||| |||||||||| |||||||  |||||||| ||||||   ||||||||||  || ||||| ||||||||||||||||    
T  6078 aatgggtacccaatggatagggtactacaatgcccttccccatgtccgcatttataaaaaaaatacccgtacccgtgcccgtaccctcgtgggcaacaac 5979  T
Q  227 tttag 231  Q
    |||||    
T  5978 tttag 5974  T

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Target: scaffold0024 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 239
Target Start/End: Complemental strand, 110177 - 110100
Alignment:
Q  162 ccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagtacccttc 239  Q
    ||||| |||||||||| |||||||||| | |||||| || || ||||| | |||||||||||||||||||| ||||||    
T  110177 ccatctccatacccgcgtttgtaaaaaatgcccgtatctgtgcccgtatcttcgtgggcaacaactttagtgcccttc 110100  T

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Target: scaffold0164 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 167 - 239
Target Start/End: Complemental strand, 7263 - 7191
Alignment:
Q  167 cccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagtacccttc 239  Q
    ||||||||||||||| |||||| ||||  ||||  || ||||| |||||||||||||||||||||| ||||||    
T  7263 cccatacccgcatttataaaaaatacctatacccgtgcccgtaccctcgtgggcaacaactttagtccccttc 7191  T

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Target: scaffold0164; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 167 - 239
Target Start/End: Complemental strand, 15144 - 15072
Alignment:
Q  167 cccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagtacccttc 239  Q
    ||||||||||||||| |||||| ||||  ||||  || ||||| |||||||||||||||||||||| ||||||    
T  15144 cccatacccgcatttataaaaaatacctatacccgtgcccgtaccctcgtgggcaacaactttagtccccttc 15072  T

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Target: scaffold0242 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 13245 - 13174
Alignment:
Q  161 cccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagt 232  Q
    ||||||||||||||||| ||||| |||| |||| |||||   | ||||| ||||||||||||||||||||||    
T  13245 cccatccccatacccgcgtttgtgaaaaatacctgtacccgagcccgtaccctcgtgggcaacaactttagt 13174  T

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Target: scaffold0242; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 22080 - 22009
Alignment:
Q  161 cccatccccatacccgcatttgtaaaaattacccgtacctatgtccgtaacctcgtgggcaacaactttagt 232  Q
    ||||||||||||||||| ||||| |||| |||| |||||   | ||||| ||||||||||||||||||||||    
T  22080 cccatccccatacccgcgtttgtgaaaaatacctgtacccgagcccgtaccctcgtgggcaacaactttagt 22009  T

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