View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18868_low_26 (Length: 235)
Name: NF18868_low_26
Description: NF18868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18868_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 107 - 219
Target Start/End: Original strand, 48708086 - 48708198
Alignment:
| Q |
107 |
cattgtatcctagaagataatcattaatggatgtatgataggtttaatttgtttatggaagctctgaagcattcttttataaagtaaaagggaaaagtaa |
206 |
Q |
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| T |
48708086 |
cattgtatcctagaagatgatcattaatggatgtatgataggtttaatttgtttatggaagctctgaagcattcttttataaagtaaaagggaaaagtaa |
48708185 |
T |
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| Q |
207 |
cacatgaagacta |
219 |
Q |
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| T |
48708186 |
cacatgaagacta |
48708198 |
T |
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Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 12 - 111
Target Start/End: Original strand, 48707962 - 48708061
Alignment:
| Q |
12 |
gagagtgtacattctgaatggataagtattcgagattgtttatattattactaaatgtttttaatgtgtcccttttaggagtaattttcaagtttcattg |
111 |
Q |
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| T |
48707962 |
gagagtgtacattctgaatggataagtattcgagattgtttatattattactaaatgtttttaatgtgtcccttttaggagtaattttcaagtttcattg |
48708061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 108 - 220
Target Start/End: Original strand, 12957950 - 12958058
Alignment:
| Q |
108 |
attgtatcctagaagataatcattaatggatgtatgataggtttaatttgtttatggaagctctgaagcattcttttataaagtaaaagggaaaagtaac |
207 |
Q |
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| T |
12957950 |
attgtatcctagaagatgatctttga---atgtatgataggttcaatttgtttttggaagctctgaagcattcttttttaaagtaaaaggg-aaagtagc |
12958045 |
T |
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| Q |
208 |
acatgaagactat |
220 |
Q |
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| T |
12958046 |
acatgaagactat |
12958058 |
T |
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