View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18868_low_27 (Length: 229)

Name: NF18868_low_27
Description: NF18868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18868_low_27
NF18868_low_27
[»] chr5 (4 HSPs)
chr5 (14-209)||(41579042-41579237)
chr5 (30-118)||(41579229-41579316)
chr5 (32-76)||(14717348-14717392)
chr5 (40-76)||(19117295-19117331)
[»] chr8 (4 HSPs)
chr8 (163-209)||(11961648-11961694)
chr8 (163-198)||(41745913-41745948)
chr8 (163-209)||(27790044-27790090)
chr8 (164-209)||(14919138-14919183)
[»] chr3 (3 HSPs)
chr3 (171-209)||(22757322-22757360)
chr3 (164-192)||(33402623-33402651)
chr3 (171-211)||(41736464-41736504)
[»] chr1 (1 HSPs)
chr1 (163-209)||(7050920-7050966)
[»] chr7 (3 HSPs)
chr7 (164-197)||(13141168-13141201)
chr7 (164-209)||(32769122-32769168)
chr7 (32-76)||(33815797-33815841)
[»] chr4 (2 HSPs)
chr4 (163-193)||(1858472-1858502)
chr4 (163-209)||(20369899-20369945)
[»] chr2 (1 HSPs)
chr2 (42-76)||(12027632-12027666)
[»] chr6 (1 HSPs)
chr6 (32-76)||(2428032-2428076)


Alignment Details
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 14 - 209
Target Start/End: Complemental strand, 41579237 - 41579042
Alignment:
Q  14 aagaatatagggttaactattatttgatgtgaaaacacattattagatgcatgtgtaaaataagtttaccatgtcattgtgtaagaattaaactcaaaaa 113  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41579237 aagaatataggattaactattatttgatgtgaaaacacattattagatgcatgtgtaaaataagtttaccatgtcattgtgtaagaattaaactcaaaaa 41579138  T
Q  114 atataaggnnnnnnngaacaattacactcaaagaatataaggnnnnnnngaacaagtcaaaatggaatatattagatcacaaaaagtggttcatct 209  Q
    ||||||||       |||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  41579137 atataaggtttttttgaacaattacactcaaagaatataaggtttttttgaacaagtcaaaatggaatatattagatcacaaaaagtggttcatct 41579042  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 118
Target Start/End: Complemental strand, 41579316 - 41579229
Alignment:
Q  30 ctattatttgatgtgaaaacacattattagatgcatgtgtaaaataagtttaccatgtcattgtgtaagaattaaactcaaaaaatata 118  Q
    |||||| ||||||||||||||||||||| |||| ||||||||||||| |||  || || ||||||||||||||||||||||| ||||||    
T  41579316 ctattaattgatgtgaaaacacattattggatgtatgtgtaaaataa-ttttgcacgtgattgtgtaagaattaaactcaaagaatata 41579229  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 14717348 - 14717392
Alignment:
Q  32 attatttgatgtgaaaacacattattagatgcatgtgtaaaataa 76  Q
    |||| ||||||||| ||||||| ||||||||||||||||||||||    
T  14717348 attaattgatgtgacaacacatcattagatgcatgtgtaaaataa 14717392  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 19117295 - 19117331
Alignment:
Q  40 atgtgaaaacacattattagatgcatgtgtaaaataa 76  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  19117295 atgtgacaacacattattggatgcatgtgtaaaataa 19117331  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 163 - 209
Target Start/End: Original strand, 11961648 - 11961694
Alignment:
Q  163 gaacaagtcaaaatggaatatattagatcacaaaaagtggttcatct 209  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||    
T  11961648 gaacaagccaaaatggaatatattagatcacgaaaagtggttcatct 11961694  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 198
Target Start/End: Original strand, 41745913 - 41745948
Alignment:
Q  163 gaacaagtcaaaatggaatatattagatcacaaaaa 198  Q
    |||||||| |||||||||||||||||||||||||||    
T  41745913 gaacaagttaaaatggaatatattagatcacaaaaa 41745948  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 209
Target Start/End: Complemental strand, 27790090 - 27790044
Alignment:
Q  163 gaacaagtcaaaatggaatatattagatcacaaaaagtggttcatct 209  Q
    ||||||| |||||| |||||||||||||||| ||||||| |||||||    
T  27790090 gaacaagccaaaatagaatatattagatcacgaaaagtgattcatct 27790044  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 14919183 - 14919138
Alignment:
Q  164 aacaagtcaaaatggaatatattagatcacaaaaagtggttcatct 209  Q
    |||||||||||||||||||||||||||||  | ||||| |||||||    
T  14919183 aacaagtcaaaatggaatatattagatcaacacaagtgattcatct 14919138  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 171 - 209
Target Start/End: Original strand, 22757322 - 22757360
Alignment:
Q  171 caaaatggaatatattagatcacaaaaagtggttcatct 209  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  22757322 caaaatggaatatattagatcacaaaatgtggttcatct 22757360  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 192
Target Start/End: Original strand, 33402623 - 33402651
Alignment:
Q  164 aacaagtcaaaatggaatatattagatca 192  Q
    |||||||||||||||||||||||||||||    
T  33402623 aacaagtcaaaatggaatatattagatca 33402651  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 41736464 - 41736504
Alignment:
Q  171 caaaatggaatatattagatcacaaaaagtggttcatcttg 211  Q
    ||||||||||||||||||||||| ||| ||| |||||||||    
T  41736464 caaaatggaatatattagatcaccaaaggtgattcatcttg 41736504  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 163 - 209
Target Start/End: Complemental strand, 7050966 - 7050920
Alignment:
Q  163 gaacaagtcaaaatggaatatattagatcacaaaaagtggttcatct 209  Q
    |||||||||||||||||||||||||||||| ||| |||| |||||||    
T  7050966 gaacaagtcaaaatggaatatattagatcaaaaagagtgattcatct 7050920  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 13141201 - 13141168
Alignment:
Q  164 aacaagtcaaaatggaatatattagatcacaaaa 197  Q
    ||||||||||||||||||||||||||||||||||    
T  13141201 aacaagtcaaaatggaatatattagatcacaaaa 13141168  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 32769122 - 32769168
Alignment:
Q  164 aacaagtcaaaatggaatatatta-gatcacaaaaagtggttcatct 209  Q
    |||||||||||||| ||||||||| |||||| |||||||||||||||    
T  32769122 aacaagtcaaaatgaaatatattacgatcactaaaagtggttcatct 32769168  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 33815797 - 33815841
Alignment:
Q  32 attatttgatgtgaaaacacattattagatgcatgtgtaaaataa 76  Q
    |||| ||||||||| || |||||||| ||||||||||||||||||    
T  33815797 attaattgatgtgacaatacattatttgatgcatgtgtaaaataa 33815841  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 193
Target Start/End: Complemental strand, 1858502 - 1858472
Alignment:
Q  163 gaacaagtcaaaatggaatatattagatcac 193  Q
    |||||||||||||||||||||||||||||||    
T  1858502 gaacaagtcaaaatggaatatattagatcac 1858472  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 209
Target Start/End: Original strand, 20369899 - 20369945
Alignment:
Q  163 gaacaagtcaaaatggaatatattagatcacaaaaagtggttcatct 209  Q
    ||||||||||||||| |||||||||  |||| |||||||||||||||    
T  20369899 gaacaagtcaaaatgtaatatattaattcaccaaaagtggttcatct 20369945  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 12027632 - 12027666
Alignment:
Q  42 gtgaaaacacattattagatgcatgtgtaaaataa 76  Q
    ||||||||||||||||| |||||||||||||||||    
T  12027632 gtgaaaacacattattatatgcatgtgtaaaataa 12027666  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 2428076 - 2428032
Alignment:
Q  32 attatttgatgtgaaaacacattattagatgcatgtgtaaaataa 76  Q
    |||| ||||||||| ||||||| || |||||||||||||||||||    
T  2428076 attaattgatgtgataacacatcataagatgcatgtgtaaaataa 2428032  T

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