View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18868_low_28 (Length: 227)
Name: NF18868_low_28
Description: NF18868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18868_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 114; Significance: 6e-58; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 20 - 170
Target Start/End: Complemental strand, 36369625 - 36369476
Alignment:
| Q |
20 |
aataggacacattttgcataacagactgcnnnnnnntaatgaaatataaagaacaagggatgtcatccctaaatatcacataccctttcttttttcctcc |
119 |
Q |
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| T |
36369625 |
aataggacacattttgcataacagactgcaaaaaaataatgaattataaggaacaagggatgtcatccctaaatatcacataccctttcttttttcctcc |
36369526 |
T |
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| Q |
120 |
cacatgcaatacatacatgaaaggaggaggacaattgcaactatagaaact |
170 |
Q |
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| T |
36369525 |
cacatgcaatacatacatgaaaggaggaggacaattg-aactatagaaact |
36369476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 94 - 214
Target Start/End: Complemental strand, 36417649 - 36417529
Alignment:
| Q |
94 |
atcacataccctttcttttttcctcccacatgcaatacatacatgaaaggaggaggacaattgcaactatagaaactaccagaaccgcagctaacctctt |
193 |
Q |
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|||||||||||||||| |||| || ||||||| ||| || ||| | ||||||| ||||||||||||||||||| |||| |||| |||||||||||||| |
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| T |
36417649 |
atcacataccctttctctttttcttccacatgtaattcacacagaagaggaggatgacaattgcaactatagaagctacaagaattgcagctaacctctt |
36417550 |
T |
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| Q |
194 |
tttaccaaggattcctttgct |
214 |
Q |
| |
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|||| |||||| ||||||||| |
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| T |
36417549 |
tttatcaaggactcctttgct |
36417529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 97 - 214
Target Start/End: Complemental strand, 36426474 - 36426357
Alignment:
| Q |
97 |
acataccctttcttttttcctcccacatgcaatacatacatgaaaggaggaggacaattgcaactatagaaactaccagaaccgcagctaacctcttttt |
196 |
Q |
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||||||||||||| |||| || ||||||| ||| || ||| | ||||||| ||||||||||||||||||| |||| |||| ||||||||||||||||| |
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| T |
36426474 |
acataccctttctctttttcttccacatgtaattcacacagaagaggaggatgacaattgcaactatagaagctacaagaattgcagctaacctcttttt |
36426375 |
T |
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| Q |
197 |
accaaggattcctttgct |
214 |
Q |
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||||||| ||||||||| |
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| T |
36426374 |
gccaaggactcctttgct |
36426357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 94 - 214
Target Start/End: Complemental strand, 36398061 - 36397941
Alignment:
| Q |
94 |
atcacataccctttcttttttcctcccacatgcaatacatacatgaaaggaggaggacaattgcaactatagaaactaccagaaccgcagctaacctctt |
193 |
Q |
| |
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||||||||||||||||||||| || ||||||| ||| || ||| || ||||| | ||| ||||||||||| |||||||||| || |||| |||||||| |
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| T |
36398061 |
atcacataccctttctttttttcttccacatgtaattcacacaagagaggagaatgacgattgcaactattgaaactaccataattacagccaacctctt |
36397962 |
T |
|
| Q |
194 |
tttaccaaggattcctttgct |
214 |
Q |
| |
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|||| |||||| ||||||||| |
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| T |
36397961 |
tttatcaaggactcctttgct |
36397941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 102 - 214
Target Start/End: Complemental strand, 36412310 - 36412198
Alignment:
| Q |
102 |
ccctttcttttttcctcccacatgcaatacatacatgaaaggaggaggacaattgcaactatagaaactaccagaaccgcagctaacctctttttaccaa |
201 |
Q |
| |
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|||||||| |||| || ||||||| ||| || ||| | ||||||| ||||||||||||||||||| |||| |||| |||||||||||||||||| ||| |
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| T |
36412310 |
ccctttctctttttcttccacatgtaattcacacagaagaggaggatgacaattgcaactatagaagctacaagaattgcagctaacctctttttatcaa |
36412211 |
T |
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| Q |
202 |
ggattcctttgct |
214 |
Q |
| |
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||| ||||||||| |
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| T |
36412210 |
ggactcctttgct |
36412198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 94 - 211
Target Start/End: Complemental strand, 36388282 - 36388165
Alignment:
| Q |
94 |
atcacataccctttcttttttcctcccacatgcaatacatacatgaaaggaggaggacaattgcaactatagaaactaccagaaccgcagctaacctctt |
193 |
Q |
| |
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|||||||||||| ||||||| || ||||||| | | || ||| || ||||||||||||||||||| ||||||| |||| |||| ||||| |||||||| |
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| T |
36388282 |
atcacataccctccctttttttcttccacatgtagttcacacaggagaggaggaggacaattgcaattatagaagctacaagaattgcagccaacctctt |
36388183 |
T |
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| Q |
194 |
tttaccaaggattccttt |
211 |
Q |
| |
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|||| |||| | |||||| |
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| T |
36388182 |
tttatcaagaactccttt |
36388165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 98 - 196
Target Start/End: Complemental strand, 36404992 - 36404894
Alignment:
| Q |
98 |
cataccctttcttttttcctcccacatgcaatacatacatgaaaggaggaggacaattgcaactatagaaactaccagaaccgcagctaacctcttttt |
196 |
Q |
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|||||||||| |||||| || ||||||| ||| | ||| || ||||||| |||||||||||| |||||| ||||||||| ||||| ||||||||||| |
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| T |
36404992 |
cataccctttgtttttttcttccacatgtaatttacacaggagaggaggatgacaattgcaacaatagaagctaccagaattgcagccaacctcttttt |
36404894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 214
Target Start/End: Complemental strand, 36374368 - 36374206
Alignment:
| Q |
56 |
taatgaaatataaagaacaagggatgtcatccctaaat----atcacataccctttcttttttcctcccacatgcaatacatacatgaaaggaggaggac |
151 |
Q |
| |
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||||||||||||||||||| |||| | |||| |||| |||||||||| |||||| ||| || |||| ||||| ||| | | || ||||||||||| |
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| T |
36374368 |
taatgaaatataaagaacagaggatattatccttaaaattgaatcacataccgtttcttgttttcttccacctgcaaaacacaaaggagaggaggaggac |
36374269 |
T |
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| Q |
152 |
aattgcaactatagaaactaccagaaccgcagctaacctctttttaccaaggattcctttgct |
214 |
Q |
| |
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||| |||||| ||||| | ||||||| |||| | |||||||| ||| |||| ||||||||| |
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|
| T |
36374268 |
aatcgcaactgtagaagcaaccagaattgcagaaatcctcttttgacctaggactcctttgct |
36374206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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