View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18868_low_29 (Length: 223)

Name: NF18868_low_29
Description: NF18868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18868_low_29
NF18868_low_29
[»] chr6 (10 HSPs)
chr6 (19-191)||(24384793-24384965)
chr6 (75-202)||(20128174-20128301)
chr6 (75-202)||(22204569-22204696)
chr6 (93-160)||(20205805-20205872)
chr6 (93-160)||(22099828-22099895)
chr6 (93-160)||(21972366-21972433)
chr6 (23-53)||(20238328-20238358)
chr6 (23-53)||(22132312-22132342)
chr6 (88-172)||(18997276-18997360)
chr6 (88-172)||(20086480-20086564)
[»] chr1 (1 HSPs)
chr1 (93-163)||(47634876-47634946)
[»] scaffold0007 (1 HSPs)
scaffold0007 (88-172)||(4931-5015)


Alignment Details
Target: chr6 (Bit Score: 105; Significance: 1e-52; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 24384965 - 24384793
Alignment:
Q  19 ataaaggcatgaagctttttgtgttagatacgttgcctacgttcaacatggaaaacccaggacgtattgcaacagtggaaaagaaagaggtgttggagta 118  Q
    |||||| ||||||||||||||||||||||| ||||||| ||||| ||||| ||| ||||||||||||||||||||||||||||||| |   |||||||||    
T  24384965 ataaagccatgaagctttttgtgttagatatgttgcctgcgttccacatgtaaagcccaggacgtattgcaacagtggaaaagaaataatagttggagta 24384866  T
Q  119 tcgaaccatgcactcatcgtaccaaatgatagctcgtttggataaatggcaatccgagtctgaggacagtttt 191  Q
    | ||||||||||||| || ||||||||||||||||||||||| |||  |||||| ||||||||||||||||||    
T  24384865 ttgaaccatgcactcctcataccaaatgatagctcgtttggagaaagagcaatctgagtctgaggacagtttt 24384793  T

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Target: chr6; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 75 - 202
Target Start/End: Original strand, 20128174 - 20128301
Alignment:
Q  75 ccaggacgtattgcaacagtggaaaagaaagaggtgttggagtatcgaaccatgcactcatcgtaccaaatgatagctcgtttggataaatggcaatccg 174  Q
    ||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  20128174 ccaggacgtgtagaaacagtggaaaagaaagaggtgttggagtatcgaaccatgcactcctcgtaccaaatgacagctcgtttggataaatggcaatccg 20128273  T
Q  175 agtctgaggacagttttgctgttgcatt 202  Q
    ||||||||||||||||| ||||||||||    
T  20128274 agtctgaggacagtttttctgttgcatt 20128301  T

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Target: chr6; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 75 - 202
Target Start/End: Complemental strand, 22204696 - 22204569
Alignment:
Q  75 ccaggacgtattgcaacagtggaaaagaaagaggtgttggagtatcgaaccatgcactcatcgtaccaaatgatagctcgtttggataaatggcaatccg 174  Q
    ||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  22204696 ccaggacgtgtagaaacagtggaaaagaaagaggtgttggagtatcgaaccatgcactcctcgtaccaaatgacagctcgtttggataaatggcaatccg 22204597  T
Q  175 agtctgaggacagttttgctgttgcatt 202  Q
    ||||||||||||||||| ||||||||||    
T  22204596 agtctgaggacagtttttctgttgcatt 22204569  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 160
Target Start/End: Original strand, 20205805 - 20205872
Alignment:
Q  93 gtggaaaagaaagaggtgttggagtatcgaaccatgcactcatcgtaccaaatgatagctcgtttgga 160  Q
    ||||||||||||||  |||| ||||||||||||||||||||  |||||||||| | |||| |||||||    
T  20205805 gtggaaaagaaagatatgttagagtatcgaaccatgcactcgccgtaccaaatcacagcttgtttgga 20205872  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 160
Target Start/End: Original strand, 22099828 - 22099895
Alignment:
Q  93 gtggaaaagaaagaggtgttggagtatcgaaccatgcactcatcgtaccaaatgatagctcgtttgga 160  Q
    ||||||||||||||  |||| ||||||||||||||||||||  |||||||||| | |||| |||||||    
T  22099828 gtggaaaagaaagatatgttagagtatcgaaccatgcactcgccgtaccaaatcacagcttgtttgga 22099895  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 160
Target Start/End: Original strand, 21972366 - 21972433
Alignment:
Q  93 gtggaaaagaaagaggtgttggagtatcgaaccatgcactcatcgtaccaaatgatagctcgtttgga 160  Q
    ||||||||||||||| |||  ||| ||||||||||||||||  |||||||||| | |||| |||||||    
T  21972366 gtggaaaagaaagagttgtcagagaatcgaaccatgcactcgccgtaccaaatcacagcttgtttgga 21972433  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 53
Target Start/End: Original strand, 20238328 - 20238358
Alignment:
Q  23 aggcatgaagctttttgtgttagatacgttg 53  Q
    |||||||||||||||||||||||||||||||    
T  20238328 aggcatgaagctttttgtgttagatacgttg 20238358  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 53
Target Start/End: Original strand, 22132312 - 22132342
Alignment:
Q  23 aggcatgaagctttttgtgttagatacgttg 53  Q
    |||||||||||||||||||||||||||||||    
T  22132312 aggcatgaagctttttgtgttagatacgttg 22132342  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 172
Target Start/End: Original strand, 18997276 - 18997360
Alignment:
Q  88 caacagtggaaaagaaagaggtgttggagtatcgaaccatgcactcatcgtaccaaatgatagctcgtttggataaatggcaatc 172  Q
    ||||||||||||||||| || ||| |||||| |||||  | ||||| |||||  ||||||  ||| ||||||||||| |||||||    
T  18997276 caacagtggaaaagaaatagttgtaggagtaacgaacattacactcgtcgtaataaatgactgcttgtttggataaagggcaatc 18997360  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 172
Target Start/End: Original strand, 20086480 - 20086564
Alignment:
Q  88 caacagtggaaaagaaagaggtgttggagtatcgaaccatgcactcatcgtaccaaatgatagctcgtttggataaatggcaatc 172  Q
    |||||||||||||||||||   | ||||||||||||||||||| |  |||||  |||| | |||| ||||||||||  |||||||    
T  20086480 caacagtggaaaagaaagactcgctggagtatcgaaccatgcaattttcgtaataaattacagcttgtttggataatgggcaatc 20086564  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 163
Target Start/End: Complemental strand, 47634946 - 47634876
Alignment:
Q  93 gtggaaaagaaagaggtgttggagtatcgaaccatgcactcatcgtaccaaatgatagctcgtttggataa 163  Q
    ||||| || |||||||||||||| ||||||||||||||||| |||||||| || | |||| ||||||||||    
T  47634946 gtggagaaaaaagaggtgttggaatatcgaaccatgcactcgtcgtaccagattacagcttgtttggataa 47634876  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 172
Target Start/End: Complemental strand, 5015 - 4931
Alignment:
Q  88 caacagtggaaaagaaagaggtgttggagtatcgaaccatgcactcatcgtaccaaatgatagctcgtttggataaatggcaatc 172  Q
    |||||||||||||||||||    |||||||||||||||||||| |  |||||  |||| | |||| ||||||||||  |||||||    
T  5015 caacagtggaaaagaaagactcattggagtatcgaaccatgcaattttcgtaataaattacagcttgtttggataatgggcaatc 4931  T

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