View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18868_low_3 (Length: 516)
Name: NF18868_low_3
Description: NF18868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18868_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 59; Significance: 9e-25; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 30499609 - 30499699
Alignment:
| Q |
1 |
ttcctttttctctttcttctctgtttttattagttctaccccttttatgcttaagctggagataacttgttcccttaggaaaccggaaaac |
91 |
Q |
| |
|
|||||| || |||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||| || ||||||||| |
|
|
| T |
30499609 |
ttccttcttttctttcttctatgtttttattagttctaccccttttatgcttaagatggagagaacttgtgcccttagaaagccggaaaac |
30499699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 206 - 306
Target Start/End: Original strand, 30499953 - 30500053
Alignment:
| Q |
206 |
ccaaatattaaatcaaaggcttaaatacacttttgaccatttaatttctatcgactcacaaa-ttagtcctctcatttctaaattcgataatatagtttt |
304 |
Q |
| |
|
||||||||| || |||| ||||||||||||||||||||||| |||||||||||||| |||| ||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
30499953 |
ccaaatattgaactaaagacttaaatacacttttgaccattt-atttctatcgactcgcaaatttagtcctctcctttctaaattcgtaaatatagtttt |
30500051 |
T |
|
| Q |
305 |
ta |
306 |
Q |
| |
|
|| |
|
|
| T |
30500052 |
ta |
30500053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 30499852 - 30499912
Alignment:
| Q |
128 |
ctgccaacctctccagccttacacttacttcgatatccaatttgaaacacttccatattcc |
188 |
Q |
| |
|
|||||||||||| || |||||||| |||| ||||||||||||| |||||||||| |||||| |
|
|
| T |
30499852 |
ctgccaacctcttcatccttacacctactgcgatatccaatttaaaacacttccttattcc |
30499912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 426
Target Start/End: Original strand, 30500099 - 30500181
Alignment:
| Q |
344 |
tagctgcaatgagaatattatgtagggtccgaaatttgaatctcagactccccacttctcttcatttaaaatgtgtgagtctc |
426 |
Q |
| |
|
||||||||| || ||||||||| |||| |||| || ||||||||| || ||||||||| |||||||||||||||||||| |
|
|
| T |
30500099 |
tagctgcaacgacaatattatgcaggggccgatgttcaaatctcagattctccacttctcaagatttaaaatgtgtgagtctc |
30500181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 385 - 445
Target Start/End: Original strand, 13105154 - 13105214
Alignment:
| Q |
385 |
ctcagactccccacttctcttcatttaaaatgtgtgagtctcagtcattaggttacttgac |
445 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||| ||||||||| | |||||||| |
|
|
| T |
13105154 |
ctcagacaccccacttctccacatttaaaatgtgtgagctccagtcattatgctacttgac |
13105214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 425
Target Start/End: Complemental strand, 28816036 - 28815936
Alignment:
| Q |
325 |
gtaagcacaactctgttagtagctgcaatgagaatattatgtagggtccgaaatttgaatctcagactccccacttctcttcatttaaaatgtgtgagtc |
424 |
Q |
| |
|
||||||||||||| || |||||||||| || | ||||||| ||||| | | |||||||| || | | ||||||||| ||||||||||||||||||| |
|
|
| T |
28816036 |
gtaagcacaactcagtcggtagctgcaaggacagtattatgcagggtgtggagtttgaatcccaaaatttccacttctccacatttaaaatgtgtgagtc |
28815937 |
T |
|
| Q |
425 |
t |
425 |
Q |
| |
|
| |
|
|
| T |
28815936 |
t |
28815936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 442
Target Start/End: Complemental strand, 35240067 - 35240003
Alignment:
| Q |
378 |
tttgaatctcagactccccacttctcttcatttaaaatgtgtgagtctcagtcattaggttactt |
442 |
Q |
| |
|
|||||||| || ||||||||||| || ||||||||||||| ||| |||||||| |||| ||||| |
|
|
| T |
35240067 |
tttgaatcccaaactccccacttttccacatttaaaatgtgcgagcctcagtcactaggctactt |
35240003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University