View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18868_low_4 (Length: 455)
Name: NF18868_low_4
Description: NF18868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18868_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Original strand, 2018624 - 2019071
Alignment:
| Q |
1 |
atccttacgcctcacttgtggctcccattttaccttcgagttcgaggacgtcgaagaagatgctttcgacctcttcctttatagactgtcgttcaaagga |
100 |
Q |
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| T |
2018624 |
atccttacgcctcacttgtggctcccattttaccttcgagttcgaggacgtcgaagaagatgctttcgacctcttcctttatagactgtcgttcaaagga |
2018723 |
T |
|
| Q |
101 |
attcaggaactcgatctctgcttggtcactttaatcgaattgccttttggcttctacacttgcaataatcttgtcacacttaagctagaaaatgttactt |
200 |
Q |
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| T |
2018724 |
attcaggaactcgatctctgcttggtcactttaatcgaattgccttttggcttctacacttgcaataatcttgtcacacttaagctagacaatgttactt |
2018823 |
T |
|
| Q |
201 |
tcaaagatggctcttcctatatcaattttccattactcaaatccctaaatttgaacgacgtcgtctttggaaaccgtgctaacatgttggacnnnnnnng |
300 |
Q |
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| T |
2018824 |
tcaaagatggctcttcctatatcaattttccattactcaaatcccttaatttgaacgacgtcgtctttggaaatcgtgctaacatgtttgactttttttg |
2018923 |
T |
|
| Q |
301 |
cggatgtcccaatgttgaagatgtagaagtgacttcactatcaatagttaatagtcgcattcctcagccaccagaagagggggttgaagccttaccaaag |
400 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2018924 |
cggatgtcccaatgttgaagatgtagaagtgacatcactatcaatagttaatagtcgcattcctcagccaccagaagagggggttgaagccttaccaaag |
2019023 |
T |
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| Q |
401 |
ttggtcagagcaaaaatttcagaattatatagcatgttacctttgctt |
448 |
Q |
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| T |
2019024 |
ttggtcagagcaaaaatttcagaattacatagcatgttacctttgctt |
2019071 |
T |
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