View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18868_low_5 (Length: 442)

Name: NF18868_low_5
Description: NF18868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18868_low_5
NF18868_low_5
[»] chr6 (3 HSPs)
chr6 (55-430)||(7563953-7564330)
chr6 (171-206)||(34625743-34625778)
chr6 (171-219)||(6294538-6294586)
[»] chr5 (3 HSPs)
chr5 (172-218)||(28322251-28322297)
chr5 (171-218)||(9895156-9895203)
chr5 (171-206)||(40878405-40878440)
[»] chr4 (5 HSPs)
chr4 (171-217)||(9906783-9906829)
chr4 (171-206)||(32369927-32369962)
chr4 (172-218)||(18783987-18784033)
chr4 (176-213)||(27857943-27857980)
chr4 (171-203)||(12710012-12710044)
[»] chr8 (7 HSPs)
chr8 (171-208)||(2506191-2506228)
chr8 (171-219)||(3508061-3508109)
chr8 (171-203)||(10170404-10170436)
chr8 (171-206)||(29096955-29096990)
chr8 (171-218)||(33697144-33697191)
chr8 (171-203)||(2517116-2517148)
chr8 (171-203)||(34768337-34768369)
[»] chr3 (2 HSPs)
chr3 (171-206)||(36302002-36302037)
chr3 (171-206)||(49636841-49636876)
[»] chr2 (3 HSPs)
chr2 (171-206)||(5461184-5461219)
chr2 (171-213)||(15098113-15098155)
chr2 (172-206)||(32102875-32102909)
[»] chr7 (3 HSPs)
chr7 (171-213)||(23948401-23948443)
chr7 (171-203)||(28266483-28266515)
chr7 (171-215)||(32855363-32855407)
[»] chr1 (1 HSPs)
chr1 (168-206)||(3148156-3148194)


Alignment Details
Target: chr6 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 55 - 430
Target Start/End: Complemental strand, 7564330 - 7563953
Alignment:
Q  55 attgatactattaacctttatcttgctaattaatgagaggtggttatgcttatgcttatgctcctgctttttcttgctatgaagcacaaacacgacaccg 154  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  7564330 attgatactattaacctttatcttgctacttaatgagaggtggttatgcttatgcttatgctcctgctttttcttgctatgaagcacaaacacgacacta 7564231  T
Q  155 acttgtccattcgagaaataatttgagaaaataaattaattgaatgtaatcatacgtgttggtgctacctaatttgagaactatcttggttacctagttc 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7564230 acttgtccattcgagaaataatttgagaaaataaattaattgaatgtaatcatacgtgttggtgctacctaatttgagaactatcttggttacctggttc 7564131  T
Q  255 atgtgttacacaagacatgccaagccaataaccataacaccgtctatttggttaagtcggtcattgcctatcgacataacatcatctaacacagtgttcc 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7564130 atgtgttacacaagacatgccaagccaataaccataacaccgtctatttggttaagtcggtcattgcctatcgacataacatcatctaacacagtgttcc 7564031  T
Q  355 tctcc-attgttccctttgcctcttagctttaaatacacttcttgtag-tttttgtcattgttacttgggaaaattca 430  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7564030 tctccaattgttccctttgcctcttagctttaaatacacttcttgtagttttttgtcattgttacttgggaaaattca 7563953  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 206
Target Start/End: Original strand, 34625743 - 34625778
Alignment:
Q  171 aataatttgagaaaataaattaattgaatgtaatca 206  Q
    |||||||||||||||| |||||||||||||||||||    
T  34625743 aataatttgagaaaatgaattaattgaatgtaatca 34625778  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 6294586 - 6294538
Alignment:
Q  171 aataatttgagaaaataaattaattgaatgtaatcatacgtgttggtgc 219  Q
    |||||||||||||||| ||||||||||||| ||||  | ||||||||||    
T  6294586 aataatttgagaaaatgaattaattgaatgcaatcgcatgtgttggtgc 6294538  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 28322251 - 28322297
Alignment:
Q  172 ataatttgagaaaataaattaattgaatgtaatcatacgtgttggtg 218  Q
    ||||||||||||||| ||||||||||||||||||| | |||||||||    
T  28322251 ataatttgagaaaatgaattaattgaatgtaatcacatgtgttggtg 28322297  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 218
Target Start/End: Original strand, 9895156 - 9895203
Alignment:
Q  171 aataatttgagaaaataaattaattgaatgtaatcatacgtgttggtg 218  Q
    |||||||||||||||||||||| ||||| ||||||| | |||||||||    
T  9895156 aataatttgagaaaataaattatttgaacgtaatcacatgtgttggtg 9895203  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 206
Target Start/End: Complemental strand, 40878440 - 40878405
Alignment:
Q  171 aataatttgagaaaataaattaattgaatgtaatca 206  Q
    |||||||||||||| |||||||||||||||||||||    
T  40878440 aataatttgagaaactaaattaattgaatgtaatca 40878405  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 9906783 - 9906829
Alignment:
Q  171 aataatttgagaaaataaattaattgaatgtaatcatacgtgttggt 217  Q
    ||||||| ||||||||||||||||||||||||||||||  |||||||    
T  9906783 aataattagagaaaataaattaattgaatgtaatcatatatgttggt 9906829  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 206
Target Start/End: Complemental strand, 32369962 - 32369927
Alignment:
Q  171 aataatttgagaaaataaattaattgaatgtaatca 206  Q
    |||||||||||||||| |||||||||||||||||||    
T  32369962 aataatttgagaaaatgaattaattgaatgtaatca 32369927  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 18783987 - 18784033
Alignment:
Q  172 ataatttgagaaaataaattaattgaatgtaatcatacgtgttggtg 218  Q
    ||||||||||||||| || |||||||||||||| | |||||||||||    
T  18783987 ataatttgagaaaatgaagtaattgaatgtaattacacgtgttggtg 18784033  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 27857980 - 27857943
Alignment:
Q  176 tttgagaaaataaattaattgaatgtaatcatacgtgt 213  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  27857980 tttgagaaaattaattaattgaatgtaatcacacgtgt 27857943  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 203
Target Start/End: Original strand, 12710012 - 12710044
Alignment:
Q  171 aataatttgagaaaataaattaattgaatgtaa 203  Q
    |||||||||||||||||||||||||||| ||||    
T  12710012 aataatttgagaaaataaattaattgaacgtaa 12710044  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 2506191 - 2506228
Alignment:
Q  171 aataatttgagaaaataaattaattgaatgtaatcata 208  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  2506191 aataattagagaaaataaattaattgaatgtaatcata 2506228  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 3508061 - 3508109
Alignment:
Q  171 aataatttgagaaaataaattaattgaatgtaatcatacgtgttggtgc 219  Q
    ||||||||||||||||||  ||||| |||||||||||| ||||||||||    
T  3508061 aataatttgagaaaataacataattcaatgtaatcatatgtgttggtgc 3508109  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 203
Target Start/End: Complemental strand, 10170436 - 10170404
Alignment:
Q  171 aataatttgagaaaataaattaattgaatgtaa 203  Q
    |||||||||||||||||||||||||||||||||    
T  10170436 aataatttgagaaaataaattaattgaatgtaa 10170404  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 206
Target Start/End: Original strand, 29096955 - 29096990
Alignment:
Q  171 aataatttgagaaaataaattaattgaatgtaatca 206  Q
    |||||||| |||||||||||||||||||||||||||    
T  29096955 aataatttaagaaaataaattaattgaatgtaatca 29096990  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 218
Target Start/End: Complemental strand, 33697191 - 33697144
Alignment:
Q  171 aataatttgagaaaataaattaattgaatgtaatcatacgtgttggtg 218  Q
    ||||||||||||||||||| ||||||||| ||| ||||||||| ||||    
T  33697191 aataatttgagaaaataaaataattgaatataaccatacgtgtcggtg 33697144  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 203
Target Start/End: Original strand, 2517116 - 2517148
Alignment:
Q  171 aataatttgagaaaataaattaattgaatgtaa 203  Q
    |||||||||||||||| ||||||||||||||||    
T  2517116 aataatttgagaaaatgaattaattgaatgtaa 2517148  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 203
Target Start/End: Complemental strand, 34768369 - 34768337
Alignment:
Q  171 aataatttgagaaaataaattaattgaatgtaa 203  Q
    |||| ||||||||||||||||||||||||||||    
T  34768369 aatagtttgagaaaataaattaattgaatgtaa 34768337  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 206
Target Start/End: Original strand, 36302002 - 36302037
Alignment:
Q  171 aataatttgagaaaataaattaattgaatgtaatca 206  Q
    |||||| |||||||||||||||||||||||||||||    
T  36302002 aataatgtgagaaaataaattaattgaatgtaatca 36302037  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 206
Target Start/End: Complemental strand, 49636876 - 49636841
Alignment:
Q  171 aataatttgagaaaataaattaattgaatgtaatca 206  Q
    |||||||||||||||| |||||||||||||||||||    
T  49636876 aataatttgagaaaatgaattaattgaatgtaatca 49636841  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 206
Target Start/End: Complemental strand, 5461219 - 5461184
Alignment:
Q  171 aataatttgagaaaataaattaattgaatgtaatca 206  Q
    |||||||||||| |||||||||||||||||||||||    
T  5461219 aataatttgagataataaattaattgaatgtaatca 5461184  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 213
Target Start/End: Complemental strand, 15098155 - 15098113
Alignment:
Q  171 aataatttgagaaaataaattaattgaatgtaatcatacgtgt 213  Q
    ||||||||||||||| |||||||||||||||||| ||| ||||    
T  15098155 aataatttgagaaaaaaaattaattgaatgtaattataagtgt 15098113  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 206
Target Start/End: Complemental strand, 32102909 - 32102875
Alignment:
Q  172 ataatttgagaaaataaattaattgaatgtaatca 206  Q
    |||||||||||||||||||||||||||| ||||||    
T  32102909 ataatttgagaaaataaattaattgaatataatca 32102875  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 213
Target Start/End: Original strand, 23948401 - 23948443
Alignment:
Q  171 aataatttgagaaaataaattaattgaatgtaatcatacgtgt 213  Q
    |||||||||| ||||| ||||||||||||||||||||| ||||    
T  23948401 aataatttgaaaaaatcaattaattgaatgtaatcatatgtgt 23948443  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 203
Target Start/End: Original strand, 28266483 - 28266515
Alignment:
Q  171 aataatttgagaaaataaattaattgaatgtaa 203  Q
    |||||||||||||||||||||||||| ||||||    
T  28266483 aataatttgagaaaataaattaattggatgtaa 28266515  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 32855363 - 32855407
Alignment:
Q  171 aataatttgagaaaataaattaattgaatgtaatcatacgtgttg 215  Q
    |||||||| ||||||| | ||||||||||||||||||| ||||||    
T  32855363 aataatttaagaaaatgatttaattgaatgtaatcatatgtgttg 32855407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 206
Target Start/End: Original strand, 3148156 - 3148194
Alignment:
Q  168 agaaataatttgagaaaataaattaattgaatgtaatca 206  Q
    |||||||||||||||||||||||||||| ||| ||||||    
T  3148156 agaaataatttgagaaaataaattaatttaatataatca 3148194  T

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