View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18868_low_6 (Length: 437)
Name: NF18868_low_6
Description: NF18868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18868_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 17 - 414
Target Start/End: Original strand, 14852192 - 14852589
Alignment:
| Q |
17 |
aagaatagctataccccctcctttaccttctcgatcaacacaaaagcaacaatcaagattcaagatatattttaactcctcaattttattagaaagacaa |
116 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
14852192 |
aagaatagctataccccctcctctaccttctcgatcaacacaaaagcaataatcaagattcaagatatatcttaactcctcaattttattagaaagacag |
14852291 |
T |
|
| Q |
117 |
agagtctcaaatagtattattacatccggcttgtacgtccggttcaggtatttgagattcggaattgtactcgggctatctacaccccgacaattccatg |
216 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
14852292 |
agagtctcaaacagtattattacatccggcttgtacgtccggttcaggtatttgagattcggaattgtactcgggctacctacaccccgacaattccatg |
14852391 |
T |
|
| Q |
217 |
agatgcaactcattttttctggcaggcctgattatcaggacccgccattacattagcatcaaaaagaggattaacatgaacagtgtttgatgcgccacta |
316 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14852392 |
agatgcaactcattttttctggcaggcctgactatcaggacccgccattacattagcatcaaaaagaggattaacatgaacagtgtttgatgcgccacta |
14852491 |
T |
|
| Q |
317 |
ttctgggtagattctgttgcattctccacttgcttctcgttgttatgctccgcttccttcaaaaattcagatcttgatctctttttaggaccctcctt |
414 |
Q |
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|| ||||||||||||||||||||||||| ||| |||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
14852492 |
ttatgggtagattctgttgcattctccatttgattctcgttgttatgcttcgcttcctccaaaaattcagttcttgatctctttttaggaccctcctt |
14852589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 177 - 214
Target Start/End: Complemental strand, 22184950 - 22184913
Alignment:
| Q |
177 |
ggaattgtactcgggctatctacaccccgacaattcca |
214 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |
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|
| T |
22184950 |
ggaattgtactcgggctatctaaaccccgacaattcca |
22184913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 214
Target Start/End: Complemental strand, 14501807 - 14501770
Alignment:
| Q |
177 |
ggaattgtactcgggctatctacaccccgacaattcca |
214 |
Q |
| |
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||||||| |||||||||| ||||||||||||||||||| |
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|
| T |
14501807 |
ggaattgcactcgggctacctacaccccgacaattcca |
14501770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 119 - 279
Target Start/End: Original strand, 10984852 - 10985012
Alignment:
| Q |
119 |
agtctcaaatagtattattacatccggcttgtacgtccggttcaggtatttgagattcggaattgtactcgggctatctacaccccgacaattccatgag |
218 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||| |||||||| || || ||||||||||||||||| | | |||||||||||||||| |
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| T |
10984852 |
agtctcaaatagtattattacatccggattgtaagtccggttgaggtatttaaggtttggaattgtactcgggctccccaggccccgacaattccatgca |
10984951 |
T |
|
| Q |
219 |
atgcaactcattttttctggcaggcctgattatcaggacccgccattacattagcatcaaa |
279 |
Q |
| |
|
|| ||| ||||||| |||||||||| | ||||| || ||| |||||||| ||||||| |
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|
| T |
10984952 |
atacaaatcattttggtaggcaggcctggatttcaggtcctgcctttacattaacatcaaa |
10985012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 162 - 272
Target Start/End: Original strand, 16939850 - 16939960
Alignment:
| Q |
162 |
aggtatttgagattcggaattgtactcgggctatctacaccccgacaattccatgagatgcaactcattttttctggcaggcctgattatcaggacccgc |
261 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||| ||| ||||| ||| ||||| |||| ||||||||||| |||| |||||| | | |||| ||||| |
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| T |
16939850 |
aggtatttgagattaggaactgtactcgggctacctaaacccctacagttccaactgatgaaactcatttttcttggcgggcctggtaaccaggtcccgc |
16939949 |
T |
|
| Q |
262 |
cattacattag |
272 |
Q |
| |
|
||||||||||| |
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|
| T |
16939950 |
cattacattag |
16939960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 8562084 - 8562048
Alignment:
| Q |
178 |
gaattgtactcgggctatctacaccccgacaattcca |
214 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8562084 |
gaattgtactcgggctacctacaccccgacaattcca |
8562048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 214
Target Start/End: Original strand, 6010089 - 6010126
Alignment:
| Q |
177 |
ggaattgtactcgggctatctacaccccgacaattcca |
214 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||| |
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|
| T |
6010089 |
ggaattgcactcgggctacctacaccccgacaattcca |
6010126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 214
Target Start/End: Complemental strand, 17782930 - 17782893
Alignment:
| Q |
177 |
ggaattgtactcgggctatctacaccccgacaattcca |
214 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
17782930 |
ggaattgcactcgggctacctacaccccgacaattcca |
17782893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 214
Target Start/End: Complemental strand, 19091557 - 19091520
Alignment:
| Q |
177 |
ggaattgtactcgggctatctacaccccgacaattcca |
214 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
19091557 |
ggaattgcactcgggctacctacaccccgacaattcca |
19091520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 177 - 214
Target Start/End: Complemental strand, 22288463 - 22288426
Alignment:
| Q |
177 |
ggaattgtactcgggctatctacaccccgacaattcca |
214 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
22288463 |
ggaattgtactcgggctacctacaccccgacaattcca |
22288426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 214
Target Start/End: Complemental strand, 26903600 - 26903563
Alignment:
| Q |
177 |
ggaattgtactcgggctatctacaccccgacaattcca |
214 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||| |
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|
| T |
26903600 |
ggaatagtactcgggctacctacaccccgacaattcca |
26903563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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