View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18868_low_7 (Length: 405)
Name: NF18868_low_7
Description: NF18868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18868_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 4 - 400
Target Start/End: Complemental strand, 29356194 - 29355799
Alignment:
| Q |
4 |
atgagacgaagtgaaacttgtactatggtgataacatgaaattcttccgaagaagannnnnnnncagtccaactcttccaccgaattctgttgctgcatt |
103 |
Q |
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| T |
29356194 |
atgagacgaagtgaaacttgtactatggtgataacatgaaattcttccgaagaagattttttttcagtccaactcttccaccgaattctgttgctgcatt |
29356095 |
T |
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| Q |
104 |
tgtatcaactcaatttcatccaaagatctatcttgaatgactggtgccttggctcgtggaagatctacatctggaacttcatcaactaaattannnnnnn |
203 |
Q |
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| T |
29356094 |
tgtatcaactcaatttcatccaaagatctatcttgaatgactggtgccttggctcgtggaagatctacatctggaacttcatcaactaaattattttttt |
29355995 |
T |
|
| Q |
204 |
nagcctcaatttggtccatgacaaaaacattaagttccatatcagaattcacagcagacttctcagcagaatgcacggcagagttccttgcagcagaatt |
303 |
Q |
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| T |
29355994 |
tagcctcaatttggtccatgacaaaaacattaagttccatatcagaattcacagcagacttctcagcagaatgcatggcagagttccttgcagcagaatt |
29355895 |
T |
|
| Q |
304 |
ttgcatgacatgagcttcttgatannnnnnnnnaaactaccctacttttgaaaataatactccaatctaccctactttcaaaataaatatccaatct |
400 |
Q |
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| T |
29355894 |
ttgcatgacatgagcttcttgat-tttttttttaaactaccctacttttgaaaataatactccaatctaccctactttcaaaataaatatccaatct |
29355799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 400
Target Start/End: Original strand, 25907955 - 25908011
Alignment:
| Q |
343 |
ccctacttttgaaaataatactccaatctaccctactttcaaaataaatatccaatct |
400 |
Q |
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| T |
25907955 |
ccctacttttgaaaa-aattgtccactctaccctacattcaaaataaatatccaatct |
25908011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 397
Target Start/End: Complemental strand, 25909095 - 25909047
Alignment:
| Q |
349 |
ttttgaaaataatactccaatctaccctactttcaaaataaatatccaa |
397 |
Q |
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| T |
25909095 |
ttttgaaaaaaattgtccactctaccctacattcaaaataaatatccaa |
25909047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 400
Target Start/End: Complemental strand, 43851877 - 43851824
Alignment:
| Q |
347 |
acttttgaaaataatactccaatctaccctactttcaaaataaatatccaatct |
400 |
Q |
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| T |
43851877 |
acttttgaaaataattgtcctatctaccctacattcaaaattattatccaatct |
43851824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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