View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18868_low_9 (Length: 398)

Name: NF18868_low_9
Description: NF18868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18868_low_9
NF18868_low_9
[»] chr2 (2 HSPs)
chr2 (11-380)||(27355618-27355988)
chr2 (11-350)||(45411202-45411542)
[»] chr6 (2 HSPs)
chr6 (86-230)||(7552123-7552267)
chr6 (94-186)||(8849934-8850027)
[»] chr8 (3 HSPs)
chr8 (33-220)||(14806232-14806416)
chr8 (91-170)||(10280970-10281049)
chr8 (19-87)||(14798507-14798575)
[»] chr3 (1 HSPs)
chr3 (96-218)||(55212258-55212377)
[»] chr5 (3 HSPs)
chr5 (48-232)||(2060165-2060339)
chr5 (35-116)||(31608527-31608605)
chr5 (282-310)||(2060027-2060055)
[»] chr7 (1 HSPs)
chr7 (111-197)||(38163088-38163179)
[»] chr4 (1 HSPs)
chr4 (94-197)||(43935827-43935931)


Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 11 - 380
Target Start/End: Original strand, 27355618 - 27355988
Alignment:
Q  11 cacagagaatgcattagtgtagtaatctagtgtatagttgtaatgatgcatatactttagattagcataagcttgttattattagtttgttactagctag 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27355618 cacagagaatgcattagtgtagtaatctagtgtatagttgtaatgatgcatatactttagattagcataagcttgttattattagtttgttactagctag 27355717  T
Q  111 aagttagttggataaggatgagttagttacttaaagattaactcaccatatggtttacttggtggtcaagtaaccatggttagttagaagttttgatttg 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27355718 aagttagttggataaggatgagttagttacttaaagattaactcaccatatggtttacttggtggtcaagaaaccatggttagttagaagttttgatttg 27355817  T
Q  211 tgtatataagttatgtattgcacttagaaaatgtatcatataagttgaataaaatttcaagaatcctttttccacaaaattaagcaacttatcccaacat 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27355818 tgtatataagttatgtattgcacttagaaaatgtatcatataagttgaataaaatttccagaatcctttttccacaaaattaagcaacttatcccaacat 27355917  T
Q  311 -aattgcctattaatcttgtaaattgatgattatttatcatgtgtaaattgcctattagcgtttagttcct 380  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27355918 aaattgcctattaatcttgtaaattgatgattatttatcatgtgtaaattgcctattagcgtttagttcct 27355988  T

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Target: chr2; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 11 - 350
Target Start/End: Complemental strand, 45411542 - 45411202
Alignment:
Q  11 cacagagaatgcattagtgtagtaatctagtgtatagttgtaatgatgcatatactttagattagcataagcttgttattattagtttgttactagctag 110  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45411542 cacagagaatgcattaatgtagtaatctagtgtatagttgtaatgatgcatatactttagattagcataagcttgttattattagtttgttactagctag 45411443  T
Q  111 aagttagttggataaggatgagttagttacttaaagattaactcaccatatggtttacttggtggtcaagtaaccatggttagttagaagttttgatttg 210  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  45411442 aagttagttggataaggatgagatagttacttaaagattaactcacgatatggtttacttggtggtcaagtaatcatggttagttagaagttttgatttg 45411343  T
Q  211 tgtatataagttatgtattgcacttagaaaatgtatcatataagttgaataaaatttcaagaatcctttttccacaaaattaagcaacttatcccaacat 310  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  45411342 tgtatataaattatgtattgcactgagaaaatgtatcatataagttgaataaaatttccacaatcctttttccacaaaattaagcaacttatcccaacat 45411243  T
Q  311 -aattgcctattaatcttgtaaattgatgattatttatcat 350  Q
     ||||||||||||||||||||||||||||||||||||||||    
T  45411242 aaattgcctattaatcttgtaaattgatgattatttatcat 45411202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 86 - 230
Target Start/End: Original strand, 7552123 - 7552267
Alignment:
Q  86 ttattattagtttgttactagctagaagttagttggataaggatgagttagttacttaaagattaactcaccatatggtttacttggtggtcaagtaacc 185  Q
    |||||||||  |||||| | |||||||||| || |||||||||||||||||||| ||||| ||||||||||||||   ||||||||   |||||||||||    
T  7552123 ttattattaaattgttattggctagaagttggtcggataaggatgagttagttagttaaaaattaactcaccatagaatttacttgcgagtcaagtaacc 7552222  T
Q  186 atggttagttagaagttttgatttgtgtatataagttatgtattg 230  Q
    || ||||||||||||||||||||||||||||||||| ||||||||    
T  7552223 atagttagttagaagttttgatttgtgtatataagtgatgtattg 7552267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 94 - 186
Target Start/End: Complemental strand, 8850027 - 8849934
Alignment:
Q  94 agtttgttactagctagaagttagttggataaggatgagttagttacttaaagattaac-tcaccatatggtttacttggtggtcaagtaacca 186  Q
    |||| ||||||||||| ||||||||||||||||  ||||||||||| || ||||||||| | | ||||||||||||||| | ||||| ||||||    
T  8850027 agttagttactagctaaaagttagttggataagattgagttagttagtttaagattaacttgatcatatggtttacttgatagtcaattaacca 8849934  T

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Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 33 - 220
Target Start/End: Complemental strand, 14806416 - 14806232
Alignment:
Q  33 taatctagtgtatagttgtaatgatgcatatactttagattagcataagcttgttattattagtttgttactagctagaagttagttggataaggatgag 132  Q
    ||||||| ||||||||||| |||||| | |||||||||||||  | ||| ||||||  |   |||||||||  ||||||||||||||||||||||| ||     
T  14806416 taatctaatgtatagttgttatgatgtacatactttagattaaaacaagtttgttaaaa---gtttgttacaggctagaagttagttggataaggacgaa 14806320  T
Q  133 ttagttacttaaagattaactcaccatatggtttacttggtggtcaagtaaccatggttagttagaagttttgatttgtgtatataag 220  Q
    ||||||| ||| |||||||||||| |||   || | ||||||| |||  |||||| |||||| ||||||||| |||||||||||||||    
T  14806319 ttagttagttagagattaactcactatagatttaatttggtggacaaacaaccatagttagtcagaagttttaatttgtgtatataag 14806232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 91 - 170
Target Start/End: Complemental strand, 10281049 - 10280970
Alignment:
Q  91 attagtttgttactagctagaagttagttggataaggatgagttagttacttaaagattaactcaccatatggtttactt 170  Q
    |||||||||| |||| ||||||||||||| || |||||||||||||||  ||| ||||||||||||| || |||||||||    
T  10281049 attagtttgtgactatctagaagttagttagagaaggatgagttagttggttagagattaactcaccttagggtttactt 10280970  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 14798575 - 14798507
Alignment:
Q  19 atgcattagtgtagtaatctagtgtatagttgtaatgatgcatatactttagattagcataagcttgtt 87  Q
    ||||||| |||  |||||||| ||| ||| ||| |||||| |||||||||||||||| ||||| |||||    
T  14798575 atgcatttgtgcggtaatctaatgtttagctgttatgatgtatatactttagattagaataagtttgtt 14798507  T

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Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 96 - 218
Target Start/End: Original strand, 55212258 - 55212377
Alignment:
Q  96 tttgttactagctagaagttagttggataaggatgagttagttacttaaagattaactcaccatatggtttacttggtggtcaagtaaccatggttagtt 195  Q
    ||||||||||| |||||||| ||| |||||||||||||||||||     |||||| |  | ||||||||||||||||| |||||||||||||| ||| ||    
T  55212258 tttgttactagatagaagttggtttgataaggatgagttagttag----agattagcaaatcatatggtttacttggtagtcaagtaaccatgattaatt 55212353  T
Q  196 agaagtttt-gatttgtgtatata 218  Q
    | ||||||| ||||||||||||||    
T  55212354 ataagttttcgatttgtgtatata 55212377  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 48 - 232
Target Start/End: Complemental strand, 2060339 - 2060165
Alignment:
Q  48 ttgtaatgatgcatatactttagattagcataagcttgttattattagtttgttactagctagaagt-tagttggataaggatgagttagttacttaaag 146  Q
    |||| |||||| |||||||||||||||| | ||| ||||||  |   ||| |||||||| || |||  ||||| ||||||||||||||||||| ||| ||    
T  2060339 ttgttatgatgtatatactttagattagtacaagtttgttagaa---gttcgttactagttataaggatagttagataaggatgagttagttagttagag 2060243  T
Q  147 attaactcaccatatggtttacttggtggtcaagtaaccatggttagttagaagtttt-gatttgtgtatataagttatgtattgca 232  Q
    ||||||||         |||||| ||||||  |||||||||  ||||||||||||||| |||||||||||| ||||  |||||||||    
T  2060242 attaactc---------tttactcggtggtttagtaaccataattagttagaagttttggatttgtgtatacaagtggtgtattgca 2060165  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 116
Target Start/End: Complemental strand, 31608605 - 31608527
Alignment:
Q  35 atctagtgtatagttgtaatgatgcatatactttagattagcataagcttgttattattagtttgttactagctagaagtta 116  Q
    |||||||||||||||||  ||||| |||||  ||||||||||| ||  |||   ||||||||||||| ||||||||||||||    
T  31608605 atctagtgtatagttgttttgatgtatatatattagattagcacaaatttg---ttattagtttgttcctagctagaagtta 31608527  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 310
Target Start/End: Complemental strand, 2060055 - 2060027
Alignment:
Q  282 ccacaaaattaagcaacttatcccaacat 310  Q
    |||||||||||||||||||||||||||||    
T  2060055 ccacaaaattaagcaacttatcccaacat 2060027  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 38163088 - 38163179
Alignment:
Q  111 aagttagttggataaggatgagttagttacttaa----agattaactc-accatatggtttacttggtggtcaagtaaccatggttagttag 197  Q
    ||||||||||||||||  ||||||||||| ||||    | |||||||  | |||| |||||||||||| ||||||||||||| |||||||||    
T  38163088 aagttagttggataagattgagttagttagttaattagaaattaacttgatcatagggtttacttggtagtcaagtaaccatagttagttag 38163179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 197
Target Start/End: Complemental strand, 43935931 - 43935827
Alignment:
Q  94 agtttgttactagctagaagttagttggataaggatgagttagttacttaaagattaac-tcaccatatggtttacttggtggtcaagtaaccatggtta 192  Q
    |||| ||||| ||||||||||||||||||||||  |||| ||  || |||||||||||| | | ||||  |||||||||   |||||||||||||  |||    
T  43935931 agttagttaccagctagaagttagttggataagattgagataaatagttaaagattaacttaatcatagcgtttacttgacagtcaagtaaccataatta 43935832  T
Q  193 gttag 197  Q
    |||||    
T  43935831 gttag 43935827  T

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