View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18869_high_6 (Length: 369)
Name: NF18869_high_6
Description: NF18869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18869_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 20232420 - 20232177
Alignment:
| Q |
18 |
atgagttaggcctcgatattcgttacacttattaagcat-----gccattaacaaaaataatcaagcgtaaaatgcaactttgcatttgcttaggaacta |
112 |
Q |
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||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20232420 |
atgagttaggcctcgatattcattacacttattaagcatttgaagccattaacaaaaataatcaagcgtaaaatgcaactttgcatttgcttaggaacta |
20232321 |
T |
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| Q |
113 |
aggattagttctttctttcattaaacaaaggaagaacaaggctagtggaagtggtttgaaatgatgaattttcactcttattcatcttttcaccaaactc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20232320 |
aggattagttctttctttcattaaacaaaggaagaacagggctagtggaagtggtttgaaatgatgaattttcactcttattcatcttttcaccaaactc |
20232221 |
T |
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| Q |
213 |
caaaaataactatccaccaatccactcctctatattccattgaa |
256 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
20232220 |
caaaaataactttccaccaatccactcctctatattccattgaa |
20232177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 263 - 358
Target Start/End: Complemental strand, 20232102 - 20232007
Alignment:
| Q |
263 |
atgaacatcgaaaatagaaaatgagagaatattaaaaataccgatctcttggtgcagatttcttgagctctttcaataacaatagtagcagttctt |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20232102 |
atgaacatcgaaaatagaaaatgagagaatattaaaaataccgatctcttggtgcagatttcttgagctctttcaataacaatagtagcagttctt |
20232007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 44314327 - 44314084
Alignment:
| Q |
18 |
atgagttaggcctcgatattcgttacacttattaagcat-----gccattaacaaaaataatcaagcgtaaaatgcaactttgcatttgcttaggaacta |
112 |
Q |
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|
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44314327 |
atgagttaggcctcgatattcattacacttattaagcatttgaagccattaacaaaaataatcaagcgtaaaatgcaactttgcatttgcttaggaacta |
44314228 |
T |
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| Q |
113 |
aggattagttctttctttcattaaacaaaggaagaacaaggctagtggaagtggtttgaaatgatgaattttcactcttattcatcttttcaccaaactc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44314227 |
aggattagttctttctttcattaaacaaaggaagaacagggctagtggaagtggtttgaaatgatgaattttcactcttattcatcttttcaccaaactc |
44314128 |
T |
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| Q |
213 |
caaaaataactatccaccaatccactcctctatattccattgaa |
256 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44314127 |
caaaaataactttccaccaatccactcctctatattccattgaa |
44314084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 263 - 358
Target Start/End: Complemental strand, 44314009 - 44313914
Alignment:
| Q |
263 |
atgaacatcgaaaatagaaaatgagagaatattaaaaataccgatctcttggtgcagatttcttgagctctttcaataacaatagtagcagttctt |
358 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44314009 |
atgaacatcgaaaatagaaaatgagagaatattaaaaataccgatctcttggtgcagatttcttgagctctttcaataacaatagtagcagttctt |
44313914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 42190490 - 42190462
Alignment:
| Q |
18 |
atgagttaggcctcgatattcgttacact |
46 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
42190490 |
atgagttaggcctcgatattcgttacact |
42190462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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