View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18869_high_8 (Length: 247)

Name: NF18869_high_8
Description: NF18869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18869_high_8
NF18869_high_8
[»] chr2 (4 HSPs)
chr2 (1-235)||(3103334-3103568)
chr2 (16-59)||(10090832-10090875)
chr2 (2-79)||(18512109-18512187)
chr2 (1-58)||(5461159-5461215)
[»] chr5 (3 HSPs)
chr5 (16-79)||(27253313-27253376)
chr5 (20-54)||(26207998-26208032)
chr5 (1-37)||(2611090-2611126)
[»] chr4 (4 HSPs)
chr4 (1-68)||(19447855-19447922)
chr4 (2-47)||(30127674-30127719)
chr4 (1-47)||(24875737-24875783)
chr4 (1-45)||(19262926-19262970)
[»] chr8 (6 HSPs)
chr8 (1-79)||(34259763-34259841)
chr8 (1-52)||(8917235-8917286)
chr8 (1-78)||(33697109-33697187)
chr8 (17-46)||(11498542-11498571)
chr8 (1-64)||(1979425-1979489)
chr8 (3-39)||(2723764-2723800)
[»] chr3 (1 HSPs)
chr3 (1-47)||(35990525-35990571)
[»] chr7 (2 HSPs)
chr7 (8-65)||(38957324-38957381)
chr7 (1-69)||(10893325-10893393)
[»] chr6 (3 HSPs)
chr6 (1-46)||(6916745-6916790)
chr6 (1-45)||(18803260-18803304)
chr6 (42-82)||(20809186-20809226)
[»] chr1 (3 HSPs)
chr1 (1-45)||(43609820-43609864)
chr1 (1-47)||(43328480-43328526)
chr1 (1-45)||(29127667-29127711)
[»] scaffold0205 (1 HSPs)
scaffold0205 (2-37)||(21430-21465)
[»] scaffold0001 (1 HSPs)
scaffold0001 (43-79)||(398698-398734)


Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 3103568 - 3103334
Alignment:
Q  1 atttgagaaaataagataattgaatgtaaccacatgtgtcaatgtcggacactggacacgccttcaatccaaagtgtcgatgtagcacataatacttaaa 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3103568 atttgagaaaataagataattgaatgtaaccgcatgtgtcaatgtcggacactggacacgccttcaatccaaagtgtcgatgtagcacataatacttaaa 3103469  T
Q  101 acttaattgggcttgaagaatttcaacttgagtccatcattgaccatactccaaatacctccaatggaaaaggccaaactgaaagcaacacctaaccaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3103468 acttaattgggcttgaagaatttcaacttgagtccatcattgaccatactccaaatacctccaatggaaaaggccaaactgaaagcaacacctaaccaac 3103369  T
Q  201 caagaatccaattgaaataccagctgaagctatat 235  Q
    |||||||||||||||||||||| ||||||||||||    
T  3103368 caagaatccaattgaaataccaactgaagctatat 3103334  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 10090875 - 10090832
Alignment:
Q  16 ataattgaatgtaaccacatgtgtcaatgtcggacactggacac 59  Q
    |||||||||||||| ||| ||| |||||||||||||||||||||    
T  10090875 ataattgaatgtaatcacgtgtatcaatgtcggacactggacac 10090832  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 18512187 - 18512109
Alignment:
Q  2 tttgagaaaataagataattgaatgtaaccacatgtgtcaatgtcggaca-ctggacacgccttcaatccaaagtgtcg 79  Q
    ||||||||||||| |||||| ||||||| ||||||||||| ||||  ||| | |||||| |||||||||  ||||||||    
T  18512187 tttgagaaaataatataattcaatgtaatcacatgtgtcagtgtcacacaccgggacacaccttcaatcagaagtgtcg 18512109  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 5461215 - 5461159
Alignment:
Q  1 atttgagaaaataagataattgaatgtaaccacatgtgtcaatgtcggacactggaca 58  Q
    |||||||| |||||  ||||||||||||| ||||| |||||||||| |||||||||||    
T  5461215 atttgagataataaattaattgaatgtaatcacat-tgtcaatgtcagacactggaca 5461159  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 27253313 - 27253376
Alignment:
Q  16 ataattgaatgtaaccacatgtgtcaatgtcggacactggacacgccttcaatccaaagtgtcg 79  Q
    |||||||||||||| ||||||||||| |||| |||||| || ||| |||||||| |||||||||    
T  27253313 ataattgaatgtaatcacatgtgtcagtgtctgacactagatacggcttcaatcaaaagtgtcg 27253376  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 26208032 - 26207998
Alignment:
Q  20 ttgaatgtaaccacatgtgtcaatgtcggacactg 54  Q
    |||||||||||||||||||||| ||||||||||||    
T  26208032 ttgaatgtaaccacatgtgtcagtgtcggacactg 26207998  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 2611126 - 2611090
Alignment:
Q  1 atttgagaaaataagataattgaatgtaaccacatgt 37  Q
    |||||||||||||| || |||||||||||||||||||    
T  2611126 atttgagaaaataaaattattgaatgtaaccacatgt 2611090  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 19447922 - 19447855
Alignment:
Q  1 atttgagaaaataagataattgaatgtaaccacatgtgtcaatgtcggacactggacacgccttcaat 68  Q
    |||||| |||||  ||||||||||||||||||||||| || ||||||||||| | ||||||| |||||    
T  19447922 atttgataaaattggataattgaatgtaaccacatgtatcgatgtcggacaccgaacacgccatcaat 19447855  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 30127719 - 30127674
Alignment:
Q  2 tttgagaaaataagataattgaatgtaaccacatgtgtcaatgtcg 47  Q
    ||||||||||| | || |||||||||||||||||||||||||||||    
T  30127719 tttgagaaaatgaaattattgaatgtaaccacatgtgtcaatgtcg 30127674  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 24875737 - 24875783
Alignment:
Q  1 atttgagaaaataagataattgaatgtaaccacatgtgtcaatgtcg 47  Q
    |||||||||||||  |||||||||||||||||||||| ||| |||||    
T  24875737 atttgagaaaatagaataattgaatgtaaccacatgtatcagtgtcg 24875783  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 19262970 - 19262926
Alignment:
Q  1 atttgagaaaataagataattgaatgtaaccacatgtgtcaatgt 45  Q
    ||||||||| || | |||||||||||||| |||||||||||||||    
T  19262970 atttgagaagatgacataattgaatgtaatcacatgtgtcaatgt 19262926  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 34259841 - 34259763
Alignment:
Q  1 atttgagaaaataagataattgaatgtaaccacatgtgtcaatgtcggacactggacacgccttcaatccaaagtgtcg 79  Q
    |||||||||||| | |||||||||| |||| | | |||||  ||| ||||||  |||||||||||||||||||||||||    
T  34259841 atttgagaaaatgaaataattgaatataactagacgtgtcggtgttggacaccagacacgccttcaatccaaagtgtcg 34259763  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 8917286 - 8917235
Alignment:
Q  1 atttgagaaaataagataattgaatgtaaccacatgtgtcaatgtcggacac 52  Q
    |||||||||||||| |||||||||||||| || ||||||| ||||| |||||    
T  8917286 atttgagaaaataacataattgaatgtaatcagatgtgtccatgtcagacac 8917235  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 33697187 - 33697109
Alignment:
Q  1 atttgagaaaataagataattgaatgtaaccacatgtgtcaatgtc-ggacactggacacgccttcaatccaaagtgtc 78  Q
    |||||||||||||| |||||||||| |||||| | |||||  ||||  |||||  ||||||||||||||| ||||||||    
T  33697187 atttgagaaaataaaataattgaatataaccatacgtgtcggtgtcaagacacctgacacgccttcaatctaaagtgtc 33697109  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 11498571 - 11498542
Alignment:
Q  17 taattgaatgtaaccacatgtgtcaatgtc 46  Q
    ||||||||||||||||||||||||||||||    
T  11498571 taattgaatgtaaccacatgtgtcaatgtc 11498542  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 1979425 - 1979489
Alignment:
Q  1 atttgagaaaataagataattgaatgtaaccacat-gtgtcaatgtcggacactggacacgcctt 64  Q
    |||||||||||| |  ||||| ||||||| ||||| ||||||||||| ||||| |||||||||||    
T  1979425 atttgagaaaattaattaattaaatgtaatcacatagtgtcaatgtcagacaccggacacgcctt 1979489  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 2723800 - 2723764
Alignment:
Q  3 ttgagaaaataagataattgaatgtaaccacatgtgt 39  Q
    |||||||||||| |||||||||||||| |||||||||    
T  2723800 ttgagaaaataacataattgaatgtaagcacatgtgt 2723764  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 35990571 - 35990525
Alignment:
Q  1 atttgagaaaataagataattgaatgtaaccacatgtgtcaatgtcg 47  Q
    |||||||||||||| |||| ||||||||||||||||||||| |||||    
T  35990571 atttgagaaaataaaataactgaatgtaaccacatgtgtcagtgtcg 35990525  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 38957381 - 38957324
Alignment:
Q  8 aaaataagataattgaatgtaaccacatgtgtcaatgtcggacactggacacgccttc 65  Q
    |||||||  ||||||||||||| ||||||||||| ||||| ||||| |||||||||||    
T  38957381 aaaataaattaattgaatgtaatcacatgtgtcagtgtcgtacactagacacgccttc 38957324  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 10893393 - 10893325
Alignment:
Q  1 atttgagaaaataagataattgaatgtaaccacatgtgtcaatgtcggacactggacacgccttcaatc 69  Q
    |||||||||||| | |||||||||||||| | |||||||   | ||||||||  |||||||||||||||    
T  10893393 atttgagaaaatgacataattgaatgtaatcgcatgtgttggtatcggacaccagacacgccttcaatc 10893325  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 6916745 - 6916790
Alignment:
Q  1 atttgagaaaataagataattgaatgtaaccacatgtgtcaatgtc 46  Q
    ||||||||||||   |||||||||||||||||||||||||||||||    
T  6916745 atttgagaaaattgaataattgaatgtaaccacatgtgtcaatgtc 6916790  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 18803260 - 18803304
Alignment:
Q  1 atttgagaaaataagataattgaatgtaaccacatgtgtcaatgt 45  Q
    |||||||||||| | |||||||||||||| |||||||||||||||    
T  18803260 atttgagaaaattacataattgaatgtaatcacatgtgtcaatgt 18803304  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 20809226 - 20809186
Alignment:
Q  42 atgtcggacactggacacgccttcaatccaaagtgtcgatg 82  Q
    ||||||||||| ||||| |||||| ||||||||||||||||    
T  20809226 atgtcggacaccggacatgccttcgatccaaagtgtcgatg 20809186  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 43609864 - 43609820
Alignment:
Q  1 atttgagaaaataagataattgaatgtaaccacatgtgtcaatgt 45  Q
    |||||||||||||| |||||||||||||| |||||||||| ||||    
T  43609864 atttgagaaaataacataattgaatgtaatcacatgtgtccatgt 43609820  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 43328480 - 43328526
Alignment:
Q  1 atttgagaaaataagataattgaatgtaaccacatgtgtcaatgtcg 47  Q
    |||||||||||| | |||||| ||||||||||||||||||| |||||    
T  43328480 atttgagaaaatgaaataatttaatgtaaccacatgtgtcattgtcg 43328526  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 29127667 - 29127711
Alignment:
Q  1 atttgagaaaataagataattgaatgtaaccacatgtgtcaatgt 45  Q
    |||||||||||| || ||||||||||||| || ||||||||||||    
T  29127667 atttgagaaaatgagttaattgaatgtaatcaaatgtgtcaatgt 29127711  T

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Target: scaffold0205 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 37
Target Start/End: Original strand, 21430 - 21465
Alignment:
Q  2 tttgagaaaataagataattgaatgtaaccacatgt 37  Q
    ||||||||||||| ||||||||||||||||||||||    
T  21430 tttgagaaaataaaataattgaatgtaaccacatgt 21465  T

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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 398698 - 398734
Alignment:
Q  43 tgtcggacactggacacgccttcaatccaaagtgtcg 79  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  398698 tgtcggacactggacatgcctttaatccaaagtgtcg 398734  T

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