View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18869_low_1 (Length: 557)
Name: NF18869_low_1
Description: NF18869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18869_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 19 - 547
Target Start/End: Complemental strand, 41705414 - 41704886
Alignment:
| Q |
19 |
attgaatcaactaggagacattgttttcattttagctatgccttttttctttgccttttcctctgtcactatacttgttcacaaaagacttgtccaaact |
118 |
Q |
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| T |
41705414 |
attgaatcaactaggagacattgttttcattttagctatgccttttttctttgccttttcctctgtcactatacttgttcacaaaagacttgtccaaact |
41705315 |
T |
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| Q |
119 |
gtggttctatgaaagttccatatcctttgagcacagaaccaaactgtggcgatccattctatagacttcgttgcgatcctcattctcaaaagctttactt |
218 |
Q |
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| T |
41705314 |
gtggttctatgaaagttccatatcctttgagcacagaaccaaactgtggcgatccattctatagacttcgttgtgatcctcattctcaaaagctttactt |
41705215 |
T |
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| Q |
219 |
tgacactctcaatggcagttcctatgttgtactaagaatcatgtcttcgatccagcgtatggtgttgcagccaccaccttggttacccggttcatgtgtc |
318 |
Q |
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| T |
41705214 |
tgacactctcaatggcagttcctatgttgtactaagagtcatgtcttcgatccagcgtatggtgttgcagccaccaccttggttacccggttcatgtgtc |
41705115 |
T |
|
| Q |
319 |
acacaagacatgccggtaagcaatggtatttggttaaatcagtcacttcctttcaacataacttcatccaacacagtgttcattttcaactgttcccctc |
418 |
Q |
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| T |
41705114 |
acacaagacatgccggtaagcaatggtatttggttaaatcagtcacttcctttcaacataacttcatccaacacagtgttcattttcaactgttcccctc |
41705015 |
T |
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| Q |
419 |
gtctcttggtttctcctcttaactgctcttcctctagtatttgtcaccgttacttggaaaattcaggtcatgttgacacaaatcgagcacttgagtgtgc |
518 |
Q |
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| T |
41705014 |
gtctcttggtttctcctcttaactgctcttcctctagtatttgtcaccgttacttggaaaattcaggtcaagttgacacaaatcgagcacttgagtgtgc |
41704915 |
T |
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| Q |
519 |
aagtggtcttcacccttgttgcacctttg |
547 |
Q |
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| T |
41704914 |
aagtggtcttcacccttgttgcacctttg |
41704886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 359
Target Start/End: Complemental strand, 1453360 - 1453265
Alignment:
| Q |
264 |
ttcgatccagcgtatggtgttgcagccaccaccttggttacccggttcatgtgtcacacaagacatgccggtaagcaatggtatttggttaaatca |
359 |
Q |
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| T |
1453360 |
ttcgatccaacgcatggtggtgcagccacaaccttggttacctggttcatgtgtcacacaaggcatgttggtaagcaatgatatttacttaaatca |
1453265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 359
Target Start/End: Complemental strand, 1465052 - 1464957
Alignment:
| Q |
264 |
ttcgatccagcgtatggtgttgcagccaccaccttggttacccggttcatgtgtcacacaagacatgccggtaagcaatggtatttggttaaatca |
359 |
Q |
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| T |
1465052 |
ttcgatccaacgcatggtggtgcagccacaaccttggttacctggttcatgtgtcacacaaggcatgttggtaagcaatgatatttacttaaatca |
1464957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 1441132 - 1441065
Alignment:
| Q |
42 |
ttttcattttagctatgccttttttctttgccttttcctctgtcactatacttgttcacaaaagactt |
109 |
Q |
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|||| ||||||||||||||||| |||| || |||||||| ||||| ||| |||||||||||||||||| |
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| T |
1441132 |
tttttattttagctatgcctttcttctgtgtcttttcctttgtcattattcttgttcacaaaagactt |
1441065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 175
Target Start/End: Complemental strand, 1441050 - 1441012
Alignment:
| Q |
137 |
catatcctttgagcacagaaccaaactgtggcgatccat |
175 |
Q |
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| T |
1441050 |
catatcctttgagcacagaaccaaattgtggcgatccat |
1441012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 7564146 - 7564110
Alignment:
| Q |
296 |
cttggttacccggttcatgtgtcacacaagacatgcc |
332 |
Q |
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| T |
7564146 |
cttggttacctggttcatgtgttacacaagacatgcc |
7564110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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