View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18869_low_2 (Length: 483)
Name: NF18869_low_2
Description: NF18869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18869_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Original strand, 37316629 - 37317087
Alignment:
| Q |
1 |
taaaatttatcactcaacacaatgctaaaaaactattgaatttgaaaataaatgtggtatacatttgttttatttcacctatttgactttcactttaggt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| ||||| |
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| T |
37316629 |
taaaatttatcactcaacacaatgctaaaaaactattgaatttgaaaatgaatgtggtatacatttgttttatttcacctattcgt-----actataggt |
37316723 |
T |
|
| Q |
101 |
gagagtgtctaacaggagcataataacaatttaccgaataacaaatnnnnnnntaaactctagtttagtagtaatacacctagctaataatggaatacga |
200 |
Q |
| |
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|||||||| |||| || || ||||| ||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37316724 |
gagagtgt--aacatgaacacaataatgatttaataaataataaatcaaaaaataaactctagtttagtagtaatacacctagctaataatggaatacga |
37316821 |
T |
|
| Q |
201 |
atacatcatactccacaatggcatctcctttagtgtaatcaacggaataaaatttagcttgagcatacccacgtacaaaacgaaaagccccagttccacc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37316822 |
atacatcatactccacaatggcatctcctttagtgtaatcaacggaataaaatttagcttgagcatacccacgtacaaaacgaaaagccccagttccacc |
37316921 |
T |
|
| Q |
301 |
aacaatggccatttctctaacaggttcactcatgatcatatttctacccaatatgctaagtgtgcttccattgaaatctccatcagtgaatgccatggtc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37316922 |
aacaatggccatttctctaacaggttcactcatgatcatatttctacccaatatgctaagtgtgcttccattgaaatctccatcagtgaatgccatggtc |
37317021 |
T |
|
| Q |
401 |
atcaccatcattagtcccatctcctcttgtgatattgaagtgtatattccttgagccttacccaca |
466 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
37317022 |
atcaccatcattagtcccatctcctcttgtgatattgaagtgtaaattccttgagccttacccaca |
37317087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 69 - 466
Target Start/End: Original strand, 37320258 - 37320666
Alignment:
| Q |
69 |
tttatttcacctatttgactttcactttaggtgagagtgtctaacaggagcataataacaatttaccgaataacaaatnnnnnnntaaactctagtttag |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||| ||||||||||| ||||||||| ||| |
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|
| T |
37320258 |
tttatttcacctatttgactttcactttaggcgagagtgtgtaacagaagcataataacaatttactgaataacaaatcaaaatataaactctactttta |
37320357 |
T |
|
| Q |
169 |
t--ag------taa---tacacctagctaataatggaatacgaatacatcatactccacaatggcatctcctttagtgtaatcaacggaataaaatttag |
257 |
Q |
| |
|
| || ||| || ||||| |||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37320358 |
tgaagcacctataaggctagacctaactaataatggaacataaatatgtcatactccacaatggcatctcctttagtgtaatcaacggaataaaatttag |
37320457 |
T |
|
| Q |
258 |
cttgagcatacccacgtacaaaacgaaaagccccagttccaccaacaatggccatttctctaacaggttcactcatgatcatatttctacccaatatgct |
357 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37320458 |
cttgagcataaccacgtacaaaacgaaaagccccagttccaccaacaatggccatttctctaacaggttcactcatgatcatatttctacccaatatgct |
37320557 |
T |
|
| Q |
358 |
aagtgtgcttccattgaaatctccatcagtgaatgccatggtcatcaccatcattagtcccatctcctcttgtgatattgaagtgtatattccttgagcc |
457 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||| |
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|
| T |
37320558 |
aagtgtgcttccattgaaatgtccatcagtgaatgtcatggtcatcaccatcattagtcccatctcctcttgtgatatagaggtgtaaattccttgagcc |
37320657 |
T |
|
| Q |
458 |
ttacccaca |
466 |
Q |
| |
|
||||||||| |
|
|
| T |
37320658 |
ttacccaca |
37320666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 179 - 466
Target Start/End: Original strand, 37324360 - 37324647
Alignment:
| Q |
179 |
cctagctaataatggaatacgaatacatcatactccacaatggcatctcctttagtgtaatcaacggaataaaatttagcttgagcatacccacgtacaa |
278 |
Q |
| |
|
|||| |||||||||||| || |||| ||||| || |||| |||||||||||| || |||||||| |||||||| ||||| |||||||| |||||||| | |
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|
| T |
37324360 |
cctaactaataatggaacacaaatatgtcatattctacaacggcatctccttttgtataatcaaccgaataaaacttagcctgagcatatccacgtacga |
37324459 |
T |
|
| Q |
279 |
aacgaaaagccccagttccaccaacaatggccatttctctaacaggttcactcatgatcatatttctacccaatatgctaagtgtgcttccattgaaatc |
378 |
Q |
| |
|
||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
37324460 |
aacgaaatgccccggttccaccaactatggccatttctctaacaggttcactcatgatcatgtttctacccaatatgctaagtgtgcttccattaaaatg |
37324559 |
T |
|
| Q |
379 |
tccatcagtgaatgccatggtcatcaccatcattagtcccatctcctcttgtgatattgaagtgtatattccttgagccttacccaca |
466 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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|
| T |
37324560 |
tccatcagtgaatgccatggtcatcaccatcattagtcccatctcctcttgtgatatagaagtgtaaattccttgagccttacccaca |
37324647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 248 - 465
Target Start/End: Original strand, 37306524 - 37306741
Alignment:
| Q |
248 |
taaaatttagcttgagcatacccacgtacaaaacgaaaagccccagttccaccaacaatggccatttctctaacaggttcactcatgatcatatttctac |
347 |
Q |
| |
|
||||| || ||||||||||| ||||| ||||| | ||||||||||||||||||||||| | ||||||||||| ||||||||||| |||||| || ||| |
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|
| T |
37306524 |
taaaacttggcttgagcataaccacgaacaaatctgaaagccccagttccaccaacaataggcatttctctaataggttcactcacgatcatgttcctag |
37306623 |
T |
|
| Q |
348 |
ccaatatgctaagtgtgcttccattgaaatctccatcagtgaatgccatggtcatcaccatcattagtcccatctcctcttgtgatattgaagtgtatat |
447 |
Q |
| |
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||||||| ||||||||||||||||| || ||||| || | ||| ||| ||||| |||||||||||||||||||| |||||||||||| || ||| || |
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|
| T |
37306624 |
ccaatatactaagtgtgcttccattaaattctccctctgagaacgcccaagtcataaccatcattagtcccatctcatcttgtgatattacagcgtaaat |
37306723 |
T |
|
| Q |
448 |
tccttgagccttacccac |
465 |
Q |
| |
|
||||||||| |||||||| |
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|
| T |
37306724 |
tccttgagctttacccac |
37306741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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