View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18869_low_3 (Length: 478)
Name: NF18869_low_3
Description: NF18869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18869_low_3 |
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| [»] chr5 (4 HSPs) |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 230 - 478
Target Start/End: Original strand, 17520942 - 17521190
Alignment:
| Q |
230 |
atttaggtgattcagtttatgagacattatttgagattcctttcattgaagtttcggctgagttttatagaggtgagttccaaaagttaagtgaatattg |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17520942 |
atttaggtgattcagtttatgagacattatttgagattcctttcatcgaagtttcggctgagttttatagaggtgagttccaaaagttaagtgaatattg |
17521041 |
T |
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| Q |
330 |
tgattgtggcgattatctatggaaagctgagaatcatttgattaaaggattgattagagtgaaccactacttggattccgtaagtcaaaagaagatttat |
429 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
17521042 |
tgattgtggcgattatctatggaaagctgagaatcatttgattaaaggattgattagagtgaaccactacttggattccataagtcaaaagaagatttat |
17521141 |
T |
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| Q |
430 |
aatgcaatgtacaaggagattattgaaaaccacatgcttagattaatcc |
478 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17521142 |
aatgcaatgtacaaggagattattgaaaaccacatgcttagattaatcc |
17521190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 17520707 - 17520914
Alignment:
| Q |
19 |
gcaatactaaatgtttgaaaagtactattgtatatggatagggtttatgttatacataacaataagactagaattcatgatcttggaatgaacttgtgga |
118 |
Q |
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||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17520707 |
gcaatactagatgttcgaaaagtactattgtatatggatagggtttatgttatacataacaataagactagaattcatgatcttggaatgaacttgtgga |
17520806 |
T |
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| Q |
119 |
gagataatgttgttaactccacccagataattcaatctcaactgaagaagactctcgttgaattagttcatggagaatgcatcagtgaagttattaatag |
218 |
Q |
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| T |
17520807 |
gagataatgttgttaactccacccagatagttcaatctcaactgaagaagactctcgttaaattagttcatcgagaatgcatcggtgaagttattaatag |
17520906 |
T |
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| Q |
219 |
agacttga |
226 |
Q |
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|||||||| |
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| T |
17520907 |
agacttga |
17520914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 442 - 478
Target Start/End: Original strand, 17570620 - 17570656
Alignment:
| Q |
442 |
aaggagattattgaaaaccacatgcttagattaatcc |
478 |
Q |
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|||||||| |||||||| ||||||||||||||||||| |
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| T |
17570620 |
aaggagatgattgaaaatcacatgcttagattaatcc |
17570656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 442 - 478
Target Start/End: Complemental strand, 17621964 - 17621928
Alignment:
| Q |
442 |
aaggagattattgaaaaccacatgcttagattaatcc |
478 |
Q |
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||||||||||||||||| |||||||||||||||||| |
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| T |
17621964 |
aaggagattattgaaaatgacatgcttagattaatcc |
17621928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 230 - 478
Target Start/End: Complemental strand, 14813238 - 14812990
Alignment:
| Q |
230 |
atttaggtgattcagtttatgagacattatttgagattcctttcattgaagtttcggctgagttttatagaggtgagttccaaaagttaagtgaatattg |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14813238 |
atttaggtgattcagtttatgagacattatttgagattcctttcatcgaagtttcggctgagttttatagaggtgagttccaaaagttaagtgaatattg |
14813139 |
T |
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| Q |
330 |
tgattgtggcgattatctatggaaagctgagaatcatttgattaaaggattgattagagtgaaccactacttggattccgtaagtcaaaagaagatttat |
429 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
14813138 |
tgattgtggcgattatctacggaaagctgagaatcatttgattaaaggattgattagagtgaaccactacttggattccataagtcaaaagaagatttat |
14813039 |
T |
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| Q |
430 |
aatgcaatgtacaaggagattattgaaaaccacatgcttagattaatcc |
478 |
Q |
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| T |
14813038 |
aatgcaatgtacaaggagattattgaaaaccacatgcttagattaatcc |
14812990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 230 - 478
Target Start/End: Complemental strand, 15260233 - 15259985
Alignment:
| Q |
230 |
atttaggtgattcagtttatgagacattatttgagattcctttcattgaagtttcggctgagttttatagaggtgagttccaaaagttaagtgaatattg |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15260233 |
atttaggtgattcagtttatgagacattatttgagattcctttcatcgaagtttcggctgagttttatagaggtgagttccaaaagttaagtgaatattg |
15260134 |
T |
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| Q |
330 |
tgattgtggcgattatctatggaaagctgagaatcatttgattaaaggattgattagagtgaaccactacttggattccgtaagtcaaaagaagatttat |
429 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
15260133 |
tgattgtggcgattatctacggaaagctgagaatcatttgattaaaggattgattagagtgaaccactacttggattccataagtcaaaagaagatttat |
15260034 |
T |
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| Q |
430 |
aatgcaatgtacaaggagattattgaaaaccacatgcttagattaatcc |
478 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15260033 |
aatgcaatgtacaaggagattattgaaaaccacatgcttagattaatcc |
15259985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 14813473 - 14813266
Alignment:
| Q |
19 |
gcaatactaaatgtttgaaaagtactattgtatatggatagggtttatgttatacataacaataagactagaattcatgatcttggaatgaacttgtgga |
118 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14813473 |
gcaatactaaatgttcgaaaagtactattgtatatggatagggtttatgttatacataacaataagactagaattcatgatcttggaatgaacttgtgga |
14813374 |
T |
|
| Q |
119 |
gagataatgttgttaactccacccagataattcaatctcaactgaagaagactctcgttgaattagttcatggagaatgcatcagtgaagttattaatag |
218 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||| |
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| T |
14813373 |
gagataatgttgttaactccacccagatagttcaatctcaactgaagaagactctcgttaaattagttcatcgagaatgcatcggtgaagttattaatag |
14813274 |
T |
|
| Q |
219 |
agacttga |
226 |
Q |
| |
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|||||||| |
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|
| T |
14813273 |
agacttga |
14813266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 15260468 - 15260261
Alignment:
| Q |
19 |
gcaatactaaatgtttgaaaagtactattgtatatggatagggtttatgttatacataacaataagactagaattcatgatcttggaatgaacttgtgga |
118 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15260468 |
gcaatactaaatgttcgaaaagtactattgtatatggatagggtttatgttatacataacaataagactagaattcatgatcttggaatgaacttgtgga |
15260369 |
T |
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| Q |
119 |
gagataatgttgttaactccacccagataattcaatctcaactgaagaagactctcgttgaattagttcatggagaatgcatcagtgaagttattaatag |
218 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||| |
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| T |
15260368 |
gagataatgttgttaactccacccagatagttcaatctcaactgaagaagactctcgttaaattagttcatcgagaatgcatcggtgaagttattaatag |
15260269 |
T |
|
| Q |
219 |
agacttga |
226 |
Q |
| |
|
|||||||| |
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|
| T |
15260268 |
agacttga |
15260261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 442 - 478
Target Start/End: Complemental strand, 14749996 - 14749960
Alignment:
| Q |
442 |
aaggagattattgaaaaccacatgcttagattaatcc |
478 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||| |
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|
| T |
14749996 |
aaggagactattgaaaatcacatgcttagattaatcc |
14749960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 442 - 478
Target Start/End: Complemental strand, 14757915 - 14757879
Alignment:
| Q |
442 |
aaggagattattgaaaaccacatgcttagattaatcc |
478 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
14757915 |
aaggagatgattgaaaatcacatgcttagattaatcc |
14757879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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