View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18869_low_4 (Length: 426)
Name: NF18869_low_4
Description: NF18869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18869_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 34592277 - 34592685
Alignment:
| Q |
1 |
actgaatgattaagccaggtacagttttaaaaaccgaagggtgtttaaaatttattttatgaaatgtttcaaaagtaaataataagcttaattggctttc |
100 |
Q |
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| T |
34592277 |
actgaatggttaagccaggtacagttttaaaaaccgaagggtgtttaaaatttattttatgaaatgttttgaaagtaaataataagcttaattggctttc |
34592376 |
T |
|
| Q |
101 |
aaattgcatcaagaaggaaaagtcatacatttccatgatattaagatcgtcttaatgcatcaaaattacaaacacatatagcatcattagtccaacatat |
200 |
Q |
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| T |
34592377 |
aaattgcatcaagaaggaaaagtcatacatttccatgatattaagatcgtcttaatgcatcaaaattacaaacacatatagcatcattaatccaacatat |
34592476 |
T |
|
| Q |
201 |
atatgaatttattctagtacatcttattgaaaattaatatgattgaacaataatttcagctcttccacttgaaactagctcgtgggtgtcaagacataca |
300 |
Q |
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| T |
34592477 |
atatgaatttattctagcacatcttattgaaaattaatatgattgaacaataacttcagctcttccacttgaaactagctcgtgggtgtcaagacataca |
34592576 |
T |
|
| Q |
301 |
tcttacaagcatgagaatctatttcagcggagatttcttttgaaacaaacgattgagttgaatgctgcatatttttcatataagatataatcaaaatcat |
400 |
Q |
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| T |
34592577 |
tcttacaagcatgagaatctatttcagcggagatttcttttgaaacaaacaattgagttgaatgctgcatatttttcatataagatataatcaaaatcat |
34592676 |
T |
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| Q |
401 |
agaaatatg |
409 |
Q |
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| T |
34592677 |
agaaatatg |
34592685 |
T |
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Back To:
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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 321
Target Start/End: Original strand, 32589314 - 32589350
Alignment:
| Q |
285 |
ggtgtcaagacatacatcttacaagcatgagaatcta |
321 |
Q |
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| T |
32589314 |
ggtgtcaaaacatacatcttacaagcatgtgaatcta |
32589350 |
T |
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