View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18869_low_5 (Length: 413)
Name: NF18869_low_5
Description: NF18869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18869_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 16 - 357
Target Start/End: Original strand, 12509992 - 12510333
Alignment:
| Q |
16 |
aattgtgacaaaagataatccaaattccaaaatatcagccttctagaggtttgtgtttacagttttgtgattttatggcttgttgttaatgatttatatg |
115 |
Q |
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| T |
12509992 |
aattatgacaaaagataatccaaattccaaaatatcagccttctagaggtttgtgtttacagttttgtgattttatggcttgttgttaatgatttatatg |
12510091 |
T |
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| Q |
116 |
gtgaagttaaaaaatatagtactaagtgaataaccaagtcaacgtttcctctttgggattaatggtacgtaggactattaaggtggtcaattaatatttt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12510092 |
gtgaagttaaaaaatatagtactaagtgaataaccaggtcaacgtttcctctttgggattaatggtacgtaggactattaaggtggtcaattaatatttt |
12510191 |
T |
|
| Q |
216 |
gctaaagtccaaattgaaccgtgttaatcagtagtagccactaaatcttccaaattcaaattatttttacaatgtatgcctgcaatctgcgccaagaaac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
12510192 |
gctaaagtccaaattgaaccgtgttaatcagtagtagccactaaatcttccaaattcaaattatttttacaacgtatgcctgcaatctgcgccaagaaac |
12510291 |
T |
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| Q |
316 |
aggatatatccgccaacttcaagtaatattgatgcatgtaaa |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
12510292 |
aggatatatccgccaacttcaagtaatattgatgcatgtaaa |
12510333 |
T |
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