View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18869_low_6 (Length: 378)
Name: NF18869_low_6
Description: NF18869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18869_low_6 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 17 - 378
Target Start/End: Original strand, 3789294 - 3789655
Alignment:
| Q |
17 |
acaccttcaatggtggaattccatccacagtgacttatgaagcaagcaatggctggatggttcaatattttactttgtggtgcccaaccaacaattttac |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3789294 |
acaccttcaatggtggaattccatccacagtgacttatgaagcaagcaatggctggatggttcaatattttactttgtggtgcccaaccaacaattttac |
3789393 |
T |
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| Q |
117 |
ctttacttccatggaagtcattagggtatgtatagtttaccttattgtcattactaggacggacaacccacagaaaaggcttgtcaagaagatcaagtcc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
3789394 |
ctttacttccatggaagtcattagggtatgtatagtttaccttattgtcattactaggacgaacaacccaaagaaaaggcttgtcaagaagatcaagtcc |
3789493 |
T |
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| Q |
217 |
tagggctagttcattaaattggttttggtccattactaccaagctaccaaaggaaacatatatgacagattgaggtgcttgtttatctaaccaatctaag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
3789494 |
tagggctagttcattaaattggttttggtccattactaccaagctaccaaaggaaacatatatgactgattgaggtgcttgtttatctaaccattctaag |
3789593 |
T |
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| Q |
317 |
caagttgagtcttctttccataatgaacttttgttgttgttactttccatcaatggaccaat |
378 |
Q |
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| T |
3789594 |
caagttgagtcttcttgccataatgaacttttgttgttgttactttccatcaatggaccaat |
3789655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 17 - 378
Target Start/End: Complemental strand, 3800813 - 3800452
Alignment:
| Q |
17 |
acaccttcaatggtggaattccatccacagtgacttatgaagcaagcaatggctggatggttcaatattttactttgtggtgcccaaccaacaattttac |
116 |
Q |
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| T |
3800813 |
acaccttctatggtagaattccatccacaatgacttataaagcaagcaatggctggatgattcaatattttactttgtggtgcccaaccaacaattttac |
3800714 |
T |
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| Q |
117 |
ctttacttccatggaagtcattagggtatgtatagtttaccttattgtcattactaggacggacaacccacagaaaaggcttgtcaagaagatcaagtcc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
3800713 |
ctttacttccatggaagtcattagggtatgtatagtttaccttattgtcattactaggacgaacaacccaaagaaaaggcttgtcaagaagatcaagtcc |
3800614 |
T |
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| Q |
217 |
tagggctagttcattaaattggttttggtccattactaccaagctaccaaaggaaacatatatgacagattgaggtgcttgtttatctaaccaatctaag |
316 |
Q |
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| T |
3800613 |
tagggctagttcattaaattggttttggtccattactaccaagctaccaaaggaaacatatatgacagattgaggtgcttgtttatctaaccaatctaag |
3800514 |
T |
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| Q |
317 |
caagttgagtcttctttccataatgaacttttgttgttgttactttccatcaatggaccaat |
378 |
Q |
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| T |
3800513 |
caagttgagtcttcttgccataatgaacttttgttgttgttactttccatcaatggaccaat |
3800452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 17 - 378
Target Start/End: Original strand, 3767958 - 3768319
Alignment:
| Q |
17 |
acaccttcaatggtggaattccatccacagtgacttatgaagcaagcaatggctggatggttcaatattttactttgtggtgcccaaccaacaattttac |
116 |
Q |
| |
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|||||||| || || |||||||| ||||| ||||| ||||| ||||| || || |||||||||||||| || | || ||| |||||| ||| || || | |
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| T |
3767958 |
acaccttctatagtagaattccaaccacaatgactaatgaaacaagctatagcaggatggttcaatatcttcttctgcggtacccaactaacgatctttc |
3768057 |
T |
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| Q |
117 |
ctttacttccatggaagtcattagggtatgtatagtttaccttattgtcattactaggacggacaacccacagaaaaggcttgtcaagaagatcaagtcc |
216 |
Q |
| |
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||||| |||| |||| |||| |||||||| |||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
3768058 |
ctttagttccgaggaattcatcagggtatgcatagtttaccttgttgtcattactaggacgaacaacccaaagaaaaggcttgtcaagaagatcaagtcc |
3768157 |
T |
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| Q |
217 |
tagggctagttcattaaattggttttggtccattactaccaagctaccaaaggaaacatatatgacagattgaggtgcttgtttatctaaccaatctaag |
316 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||| ||| ||||| | || ||| ||||||| |||||||||| |
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| T |
3768158 |
tagggctagttcattaaattggttttggtccattactgccaaactaccgaaggaaacatatacgaccgattgtgatggttgcttatctagccaatctaag |
3768257 |
T |
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| Q |
317 |
caagttgagtcttctttccataatgaacttttgttgttgttactttccatcaatggaccaat |
378 |
Q |
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|||| |||||||| ||| ||||||||||||||| | | | ||||||||||||| ||||| |
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| T |
3768258 |
gaagtcatgtcttcttgccagaatgaacttttgttgctatcattttccatcaatgggccaat |
3768319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 17 - 353
Target Start/End: Original strand, 3780236 - 3780572
Alignment:
| Q |
17 |
acaccttcaatggtggaattccatccacagtgacttatgaagcaagcaatggctggatggttcaatattttactttgtggtgcccaaccaacaattttac |
116 |
Q |
| |
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|||||||| | ||| ||||||||||| || ||||| ||||| |||||||| || || ||||||||||| || |||| || ||||| |||||||| || | |
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| T |
3780236 |
acaccttctacggtagaattccatccgcaatgactaatgaaacaagcaatagcagggtggttcaatatcttcttttgcggcgcccatccaacaatctttc |
3780335 |
T |
|
| Q |
117 |
ctttacttccatggaagtcattagggtatgtatagtttaccttattgtcattactaggacggacaacccacagaaaaggcttgtcaagaagatcaagtcc |
216 |
Q |
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||||| ||||| | || |||| |||||||| ||||||||||||||| ||||| || ||||| |||||||| | |||||| || ||||||||||||||||| |
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| T |
3780336 |
ctttagttccaagaaattcatcagggtatgcatagtttaccttattatcattgctcggacgaacaacccaaataaaaggtttatcaagaagatcaagtcc |
3780435 |
T |
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| Q |
217 |
tagggctagttcattaaattggttttggtccattactaccaagctaccaaaggaaacatatatgacagattgaggtgcttgtttatctaaccaatctaag |
316 |
Q |
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|| |||||||| ||||||||||||||||||||||| |||| |||||||||||||||||| ||| |||||||||| | || ||| | ||||||||| |
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| T |
3780436 |
taaagctagttcgttaaattggttttggtccattacggccaaactaccaaaggaaacatatgcgacggattgaggtggatattgatcgagccaatctaaa |
3780535 |
T |
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| Q |
317 |
caagttgagtcttctttccataatgaacttttgttgt |
353 |
Q |
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|| |||| |||||||| ||| ||||||||| |||||| |
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| T |
3780536 |
catgttgcgtcttcttgccagaatgaacttgtgttgt |
3780572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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