View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18869_low_7 (Length: 376)
Name: NF18869_low_7
Description: NF18869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18869_low_7 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0082 (1 HSPs) |
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| [»] scaffold0094 (1 HSPs) |
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| [»] scaffold0187 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 376
Target Start/End: Complemental strand, 37882539 - 37882182
Alignment:
| Q |
19 |
tttttatttcatagattagagaaaattttaacaagttaaggatattaagagatagtgagttggaaacaagggaaacttggtcttttcggtgttctcttaa |
118 |
Q |
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| T |
37882539 |
tttttatttcatagattagagaaaattttaacaagttaaggatattaagagatagtgagttggaaacaagggaaacttggttttttcggtgttctcttaa |
37882440 |
T |
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| Q |
119 |
aaacacgcgggcgtactccttgcttctggggacattgatccaaagctcgagtacggtccgtgcgccgtttttcttctcgaccatgaccaatgtcaatgtg |
218 |
Q |
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| T |
37882439 |
aaacacgcgggcgtactccttgcttctggggacattgatccgaagctcgagtacggtccgtgcgccgtttttcttctctaccatgaccaatgtcaatgtg |
37882340 |
T |
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| Q |
219 |
gtaccctcccgtttttggttcccattgggtttaccttgtttacaggtcgaccccatggcaggagattttggaggaagagaggagatatagtatttcacgt |
318 |
Q |
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| T |
37882339 |
gtaccctcccgtttttggttcccattgggtttaccttgtttacaggtcgaccccatggcaggagattttggaagaggagaggagatatagtatttcacgt |
37882240 |
T |
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| Q |
319 |
tgcagtacacattacaacagccacattgttcataatcacaatagtagcggtcatgact |
376 |
Q |
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| T |
37882239 |
tgcagtacacattacaacagccacattgttcataatcacaatagtagcggtcatgact |
37882182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0082 (Bit Score: 99; Significance: 9e-49; HSPs: 1)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 95 - 205
Target Start/End: Original strand, 14752 - 14862
Alignment:
| Q |
95 |
ttggtcttttcggtgttctcttaaaaacacgcgggcgtactccttgcttctggggacattgatccaaagctcgagtacggtccgtgcgccgtttttcttc |
194 |
Q |
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| T |
14752 |
ttggttttttcggtgttctcttaaaaacacgcgggcgtactccttgcttctggggacattgatccgaagctcgagtacggtccgtgcgccgtttttcttc |
14851 |
T |
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| Q |
195 |
tcgaccatgac |
205 |
Q |
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|| |||||||| |
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| T |
14852 |
tctaccatgac |
14862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 41833 - 41903
Alignment:
| Q |
205 |
ccaatgtcaatgtggtaccctcccgtttttggttcccattgggtttaccttgtttacaggtcgaccccatg |
275 |
Q |
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| T |
41833 |
ccaatatcaatgtggtaccctcccgtttttggttcccattgggtttaccttgtttacaggtcgaccccatg |
41903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 110 - 204
Target Start/End: Original strand, 17604524 - 17604618
Alignment:
| Q |
110 |
ttctcttaaaaacacgcgggcgtactccttgcttctggggacattgatccaaagctcgagtacggtccgtgcgccgtttttcttctcgaccatga |
204 |
Q |
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|||||||||||||| ||||| ||||| |||||| |||||||||||||| |||||||||||||||| || ||||||||||||||| ||||||| |
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| T |
17604524 |
ttctcttaaaaacaatcgggcatactctttgcttatggggacattgatctgaagctcgagtacggtctatgtgccgtttttcttctctaccatga |
17604618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 51195790 - 51195835
Alignment:
| Q |
160 |
aaagctcgagtacggtccgtgcgccgtttttcttctcgaccatgac |
205 |
Q |
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| T |
51195790 |
aaagctggagtacggtccgtgcgcggtttttcttctctaccatgac |
51195835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 334 - 370
Target Start/End: Original strand, 6264 - 6300
Alignment:
| Q |
334 |
aacagccacattgttcataatcacaatagtagcggtc |
370 |
Q |
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|||| ||||| |||||||||||||||||||||||||| |
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| T |
6264 |
aacaaccacaatgttcataatcacaatagtagcggtc |
6300 |
T |
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