View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18870_low_1 (Length: 651)

Name: NF18870_low_1
Description: NF18870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18870_low_1
NF18870_low_1
[»] chr2 (4 HSPs)
chr2 (27-633)||(36314701-36315305)
chr2 (75-214)||(37758818-37758956)
chr2 (93-137)||(20925569-20925613)
chr2 (17-64)||(20925484-20925531)
[»] chr5 (4 HSPs)
chr5 (9-189)||(24092180-24092360)
chr5 (93-189)||(12842753-12842848)
chr5 (93-189)||(37023105-37023200)
chr5 (17-64)||(12842886-12842933)
[»] chr3 (11 HSPs)
chr3 (43-189)||(4099595-4099741)
chr3 (93-189)||(13719333-13719428)
chr3 (93-188)||(6806762-6806857)
chr3 (93-188)||(13723230-13723324)
chr3 (65-185)||(23619200-23619324)
chr3 (93-189)||(26137128-26137223)
chr3 (65-174)||(2185233-2185342)
chr3 (19-64)||(13723147-13723192)
chr3 (159-195)||(2185182-2185218)
chr3 (9-45)||(5378100-5378136)
chr3 (9-45)||(5383436-5383472)
[»] chr1 (8 HSPs)
chr1 (65-189)||(21010556-21010680)
chr1 (93-189)||(42375146-42375241)
chr1 (93-189)||(2790753-2790848)
chr1 (93-189)||(2797183-2797278)
chr1 (65-189)||(394922-395046)
chr1 (67-175)||(24567504-24567612)
chr1 (9-45)||(14476992-14477028)
chr1 (9-45)||(23200323-23200359)
[»] chr7 (7 HSPs)
chr7 (93-189)||(13160359-13160455)
chr7 (93-189)||(11708893-11708988)
chr7 (93-188)||(11716410-11716504)
chr7 (113-189)||(13166826-13166902)
chr7 (65-186)||(37063012-37063126)
chr7 (17-64)||(11709026-11709073)
chr7 (19-65)||(13160492-13160538)
[»] scaffold0015 (4 HSPs)
scaffold0015 (93-189)||(24389-24484)
scaffold0015 (93-189)||(29705-29800)
scaffold0015 (17-64)||(24304-24351)
scaffold0015 (17-64)||(29620-29667)
[»] chr8 (9 HSPs)
chr8 (93-189)||(91606-91701)
chr8 (93-189)||(86289-86384)
chr8 (93-189)||(29010960-29011055)
chr8 (93-189)||(19802760-19802855)
chr8 (98-189)||(34949355-34949446)
chr8 (9-64)||(91739-91794)
chr8 (17-64)||(86422-86469)
chr8 (17-64)||(19802893-19802940)
chr8 (69-123)||(26491902-26491956)
[»] chr6 (6 HSPs)
chr6 (93-189)||(16772644-16772739)
chr6 (93-189)||(32708031-32708126)
chr6 (93-189)||(16777980-16778075)
chr6 (124-189)||(32703663-32703727)
chr6 (17-64)||(16777895-16777942)
chr6 (17-64)||(32708164-32708211)
[»] chr4 (2 HSPs)
chr4 (93-189)||(14026833-14026930)
chr4 (9-45)||(6746776-6746812)


Alignment Details
Target: chr2 (Bit Score: 549; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 27 - 633
Target Start/End: Original strand, 36314701 - 36315305
Alignment:
Q  27 tatagtagtcctagaggccaaatggtagttgaaatagtaatggaaacacaatctagtaataatagaaaatgtcaaacatggtggtttgttggccttattg 126  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36314701 tatagtagtcctacagaccaaatggtagttgaaatagtaatggaaacacaatctagtaataatagaaaatgtcaaacatggtggtttgttggccttattg 36314800  T
Q  127 t-caatagtaggatggtggaataggaaagctagcatggtagggtggtggctgcaaagtctatgcaatctgcatgtattgacctgtatcagtgtcactgaa 225  Q
    | ||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  36314801 ttcaatattagggtggtggaataggaaagctagcatggtagg-tggtggctgcaaagtttatgcaatctgcatgtattgacctgtatcagtgtcactgaa 36314899  T
Q  226 atgtgttagcaacgcaaagaattttctgaggtgccacattgatacaatggcactaaatgatgtgtcatgtctattgcttctgcccatccaggaccgtctt 325  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  36314900 atgtgttagcaacgcaaagaattttctgatgtgccacattgatacaacggcactaaatgacgtgtcatgtctattgcttctgcccatccaggaccgtctt 36314999  T
Q  326 atacggactataccaccttgaccaaatctgaaggagcagcaatgatggtggagctgattggatttgaatcagaggaagctaatcgggacgttgaaaatac 425  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36315000 atacggactataccaccttgaccaaatctgaaggagcagcaatgatggtggagctgattggatttgaatcagaggaagctaatcgggacgttgaaaatac 36315099  T
Q  426 taacagggtccatgcacggttcagctttctgatgtgcaagttccaagacactttgattcaaaaagggatagcgatgtgggggtgaccaagtggactgaga 525  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  36315100 taacagggtccatgcacggttcagctttctgatgtgcaagttccaagacactttgattcaaaaagg--tagcgatgtgggggtgaccaagtggactgaga 36315197  T
Q  526 gttgcacatgtaattgtagtgcttcttttgatgggctgcaccatcttctaaaacaagagtgctgcatatgatgaagtggcgtacttggagtttttcaagg 625  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36315198 gttgcacatgtaattgtagtgcttcttttgatgggctgcaccatcttctaaaacaagagtgctgcatatgatgaagtggcgtacttggagtttttcaagg 36315297  T
Q  626 atctgtat 633  Q
    ||||||||    
T  36315298 atctgtat 36315305  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 75 - 214
Target Start/End: Complemental strand, 37758956 - 37758818
Alignment:
Q  75 caatctagtaataatagaaaatgtcaaacatggtggtttgttggccttattgtcaatagtagga-tggtggaataggaaagctagcatggtagggtggtg 173  Q
    ||||||||||| |||||| | |||||  |||||||| |||||||| |||  ||||||||||||  |||||||||  ||||||||||||| |||| |||||    
T  37758956 caatctagtaaaaatagatattgtca--catggtggcttgttggcattaaagtcaatagtaggggtggtggaatgagaaagctagcatgataggttggtg 37758859  T
Q  174 gctgcaaagtctatgcaatctgcatgtattgacctgtatca 214  Q
    |||||||||||||||| ||| | |||| |||| ||||||||    
T  37758858 gctgcaaagtctatgctatcagaatgtcttgatctgtatca 37758818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 20925569 - 20925613
Alignment:
Q  93 aaatgtcaaacatggtggtttgttggccttattgtcaatagtagg 137  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  20925569 aaatgtcaaacatggtggcttgttggccttattgtcaatagtagg 20925613  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 20925484 - 20925531
Alignment:
Q  17 tggccttatttatagtagtcctagaggccaaatggtagttgaaatagt 64  Q
    ||||||||||||||| | |||||||||||| ||||||| |||||||||    
T  20925484 tggccttatttatagcaatcctagaggccatatggtagctgaaatagt 20925531  T

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Target: chr5 (Bit Score: 149; Significance: 2e-78; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 9 - 189
Target Start/End: Original strand, 24092180 - 24092360
Alignment:
Q  9 gaagaaaatggccttatttatagtagtcctagaggccaaatggtagttgaaatagtaatggaaacacaatctagtaataatagaaaatgtcaaacatggt 108  Q
    |||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  24092180 gaaggaaatggccttatttatagtaatcctagaggccatatggtagttgaaatagtaatggaaacacaatctagtaaaaatagaaaatgtcaaacatggt 24092279  T
Q  109 ggtttgttggccttattgtcaatagtaggatggtggaataggaaagctagcatggtagggtggtggctgcaaagtctatgc 189  Q
    || |||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  24092280 ggcttgttggccttattgtcaatagtagggtggtgaactaggaaagctagcatggtagggtggtggctgcaaagtctatgc 24092360  T

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Target: chr5; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 93 - 189
Target Start/End: Complemental strand, 12842848 - 12842753
Alignment:
Q  93 aaatgtcaaacatggtggtttgttggccttattgtcaatagtaggatggtggaataggaaagctagcatggtagggtggtggctgcaaagtctatgc 189  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||  ||||||||||||||||||||||||||    
T  12842848 aaatgtcaaacatggtggcttgttggccttattgtcaatagtagggtggtggaattggaaagctagcat-atagggtggtggctgcaaagtctatgc 12842753  T

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Target: chr5; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 93 - 189
Target Start/End: Original strand, 37023105 - 37023200
Alignment:
Q  93 aaatgtcaaacatggtggtttgttggccttattgtcaatagtaggatggtggaataggaaagctagcatggtagggtggtggctgcaaagtctatgc 189  Q
    |||||||||| ||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||  |||||||||||||||||| |||||||    
T  37023105 aaatgtcaaatatggtggcttgttggccttattgtcaatagtagggtggtggaattggaaagctagcat-atagggtggtggctgcaaaatctatgc 37023200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 12842933 - 12842886
Alignment:
Q  17 tggccttatttatagtagtcctagaggccaaatggtagttgaaatagt 64  Q
    ||||||||||||||| | |||||||||||| ||||||| |||||||||    
T  12842933 tggccttatttatagcaatcctagaggccatatggtagctgaaatagt 12842886  T

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Target: chr3 (Bit Score: 119; Significance: 2e-60; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 43 - 189
Target Start/End: Complemental strand, 4099741 - 4099595
Alignment:
Q  43 gccaaatggtagttgaaatagtaatggaaacacaatctagtaataatagaaaatgtcaaacatggtggtttgttggccttattgtcaatagtaggatggt 142  Q
    |||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||    
T  4099741 gccatatggtagttgaaataataatggaaacacaatctagtaaaaatagaaaatgtcaaaaatggtggcttgttggccttattgtcaatagtagggtggt 4099642  T
Q  143 ggaataggaaagctagcatggtagggtggtggctgcaaagtctatgc 189  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||    
T  4099641 ggaataggaaagctagcatggtagggtggtggctacaaagtctatgc 4099595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 93 - 189
Target Start/End: Original strand, 13719333 - 13719428
Alignment:
Q  93 aaatgtcaaacatggtggtttgttggccttattgtcaatagtaggatggtggaataggaaagctagcatggtagggtggtggctgcaaagtctatgc 189  Q
    |||||||||||||||||| |||||||||||||||||||||||| | ||||||||| |||||||||||||  ||||||||||||||||||||||||||    
T  13719333 aaatgtcaaacatggtggcttgttggccttattgtcaatagtaaggtggtggaattggaaagctagcat-atagggtggtggctgcaaagtctatgc 13719428  T

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Target: chr3; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 93 - 188
Target Start/End: Original strand, 6806762 - 6806857
Alignment:
Q  93 aaatgtcaaacatggtggtttgttggccttattgtcaatagtaggatggtggaataggaaagctagcatggtagggtggtggctgcaaagtctatg 188  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||    |||||||||||||||||||||||    
T  6806762 aaatgtcaaacatggtggcttgttggccttattgtcaatagtagggtggtggaattggaaagctagcatataggggtggtggctgcaaagtctatg 6806857  T

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Target: chr3; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 93 - 188
Target Start/End: Original strand, 13723230 - 13723324
Alignment:
Q  93 aaatgtcaaacatggtggtttgttggccttattgtcaatagtaggatggtggaataggaaagctagcatggtagggtggtggctgcaaagtctatg 188  Q
    |||||||||||||||||| |||||||||||||||| ||||||||| ||||||||| ||||||||| |||  |||||||||||||||||||||||||    
T  13723230 aaatgtcaaacatggtggcttgttggccttattgtaaatagtagggtggtggaattggaaagctaacat-atagggtggtggctgcaaagtctatg 13723324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 65 - 185
Target Start/End: Complemental strand, 23619324 - 23619200
Alignment:
Q  65 aatggaaacacaatctagtaataatagaaa----atgtcaaacatggtggtttgttggccttattgtcaatagtaggatggtggaataggaaagctagca 160  Q
    ||||||||||||||||||||| || | |||    |||||||||||| ||| ||||| ||||||  |||||||||||||||||||||| ||||| ||||||    
T  23619324 aatggaaacacaatctagtaaaaaaaaaaatataatgtcaaacatgatggcttgtttgccttaaagtcaatagtaggatggtggaatgggaaaactagca 23619225  T
Q  161 tggtagggtggtggctgcaaagtct 185  Q
    ||||||||||||||| |||||||||    
T  23619224 tggtagggtggtggccgcaaagtct 23619200  T

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Target: chr3; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 93 - 189
Target Start/End: Original strand, 26137128 - 26137223
Alignment:
Q  93 aaatgtcaaacatggtggtttgttggccttattgtcaatagtaggatggtggaataggaaagctagcatggtagggtggtggctgcaaagtctatgc 189  Q
    |||||||||| ||||||  |||||||||||||||||||||||||| ||||||||||||   ||||||||| ||||||||||||||||||||||||||    
T  26137128 aaatgtcaaatatggtgacttgttggccttattgtcaatagtagggtggtggaatagg-gtgctagcatgatagggtggtggctgcaaagtctatgc 26137223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 65 - 174
Target Start/End: Complemental strand, 2185342 - 2185233
Alignment:
Q  65 aatggaaacacaatctagtaataatagaaaatgtcaaacatggtggtttgttggccttattgtcaatagtaggatggtggaataggaaagctagcatggt 164  Q
    |||||||| |||||||| ||| |||||| |  |||||||||| ||  ||||| ||||||  |||||||||||| ||||||||| |||||| | ||||  |    
T  2185342 aatggaaatacaatctattaaaaatagatatcgtcaaacatgatgacttgtttgccttaaagtcaatagtagggtggtggaatgggaaagttggcatcat 2185243  T
Q  165 agggtggtgg 174  Q
    ||||||||||    
T  2185242 agggtggtgg 2185233  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 13723147 - 13723192
Alignment:
Q  19 gccttatttatagtagtcctagaggccaaatggtagttgaaatagt 64  Q
    ||||||||||||| | |||||||||||| ||||||| |||||||||    
T  13723147 gccttatttatagcaatcctagaggccatatggtagctgaaatagt 13723192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 2185218 - 2185182
Alignment:
Q  159 catggtagggtggtggctgcaaagtctatgcaatctg 195  Q
    |||||| |||||||||||||||||||||||| |||||    
T  2185218 catggttgggtggtggctgcaaagtctatgctatctg 2185182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 5378100 - 5378136
Alignment:
Q  9 gaagaaaatggccttatttatagtagtcctagaggcc 45  Q
    |||| |||||||||||||||||||| |||||||||||    
T  5378100 gaaggaaatggccttatttatagtaatcctagaggcc 5378136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 5383436 - 5383472
Alignment:
Q  9 gaagaaaatggccttatttatagtagtcctagaggcc 45  Q
    |||| |||||||||||||||||||| |||||||||||    
T  5383436 gaaggaaatggccttatttatagtaatcctagaggcc 5383472  T

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Target: chr1 (Bit Score: 93; Significance: 6e-45; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 65 - 189
Target Start/End: Original strand, 21010556 - 21010680
Alignment:
Q  65 aatggaaacacaatctagtaataatagaaaatgtcaaacatggtggtttgttggccttattgtcaatagtaggatggtggaataggaaagctagcatggt 164  Q
    ||||||||||||||||||||| |||||| | ||||||||||||||| |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||    
T  21010556 aatggaaacacaatctagtaaaaatagatattgtcaaacatggtggcttgttggccttattgtcaatagtagggtggtgaaattggaaagctagcatggt 21010655  T
Q  165 agggtggtggctgcaaagtctatgc 189  Q
    ||||||||| |||||||||||||||    
T  21010656 agggtggtgactgcaaagtctatgc 21010680  T

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Target: chr1; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 93 - 189
Target Start/End: Complemental strand, 42375241 - 42375146
Alignment:
Q  93 aaatgtcaaacatggtggtttgttggccttattgtcaatagtaggatggtggaataggaaagctagcatggtagggtggtggctgcaaagtctatgc 189  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||  ||||||||||||||||||||||||||    
T  42375241 aaatgtcaaacatggtggcttgttggccttattgtcaatagtagggtggtggaattggaaagctagcat-atagggtggtggctgcaaagtctatgc 42375146  T

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Target: chr1; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 93 - 189
Target Start/End: Original strand, 2790753 - 2790848
Alignment:
Q  93 aaatgtcaaacatggtggtttgttggccttattgtcaatagtaggatggtggaataggaaagctagcatggtagggtggtggctgcaaagtctatgc 189  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||| ||| |||||||||||||  ||||||||||||||||||||||||||    
T  2790753 aaatgtcaaacatggtggcttgttggccttattgtcaatagtagggtggtgaaattggaaagctagcat-atagggtggtggctgcaaagtctatgc 2790848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 93 - 189
Target Start/End: Original strand, 2797183 - 2797278
Alignment:
Q  93 aaatgtcaaacatggtggtttgttggccttattgtcaatagtaggatggtggaataggaaagctagcatggtagggtggtggctgcaaagtctatgc 189  Q
    |||||||||||||||||| || ||||||||||||||||||||||| ||||||||| |||||||||||||  ||||||||||||||||||||||||||    
T  2797183 aaatgtcaaacatggtggcttattggccttattgtcaatagtagggtggtggaattggaaagctagcat-atagggtggtggctgcaaagtctatgc 2797278  T

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Target: chr1; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 65 - 189
Target Start/End: Original strand, 394922 - 395046
Alignment:
Q  65 aatggaaacacaatctagtaataatagaaaatgtcaaacatggtggtttgttggccttattgtcaatagtaggatggtggaataggaaagctagcatggt 164  Q
    ||||||||||||||||||||| |||||| | ||||||||||| ||| || || | ||||  |||||||||||  || |||||| ||||||| ||||||||    
T  394922 aatggaaacacaatctagtaaaaatagatattgtcaaacatgatggcttatttggcttaaagtcaatagtagagtgatggaatgggaaagccagcatggt 395021  T
Q  165 agggtggtggctgcaaagtctatgc 189  Q
    || |||||| |||| ||||||||||    
T  395022 agagtggtgtctgcgaagtctatgc 395046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 67 - 175
Target Start/End: Original strand, 24567504 - 24567612
Alignment:
Q  67 tggaaacacaatctagtaataatagaaaatgtcaaacatggtggtttgttggccttattgtcaatagtaggatggtggaataggaaagctagcatggtag 166  Q
    ||||||||||||||||||| |||||| | ||||||||||||||| ||||| | ||||  |||||||||||| ||||||||| | ||| |||||||||||     
T  24567504 tggaaacacaatctagtaaaaatagatattgtcaaacatggtggcttgtttggcttaaagtcaatagtagggtggtggaatggaaaaactagcatggtaa 24567603  T
Q  167 ggtggtggc 175  Q
    | |||||||    
T  24567604 gatggtggc 24567612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 14476992 - 14477028
Alignment:
Q  9 gaagaaaatggccttatttatagtagtcctagaggcc 45  Q
    |||| |||||||||||||||||||| |||||||||||    
T  14476992 gaaggaaatggccttatttatagtaatcctagaggcc 14477028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 23200359 - 23200323
Alignment:
Q  9 gaagaaaatggccttatttatagtagtcctagaggcc 45  Q
    |||| |||||||||||||||||||| |||||||||||    
T  23200359 gaaggaaatggccttatttatagtaatcctagaggcc 23200323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 93 - 189
Target Start/End: Complemental strand, 13160455 - 13160359
Alignment:
Q  93 aaatgtcaaacatggtggtttgttggccttattgtcaatagtaggatggtggaataggaaagctagcatggtagggtggtggctgcaaagtctatgc 189  Q
    ||||||||||||||| || |||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  13160455 aaatgtcaaacatggaggcttgttggccttattttcaatagtagggtggtggaattggaaagctagcatggtagggtggtggctgcaaagtctatgc 13160359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 93 - 189
Target Start/End: Complemental strand, 11708988 - 11708893
Alignment:
Q  93 aaatgtcaaacatggtggtttgttggccttattgtcaatagtaggatggtggaataggaaagctagcatggtagggtggtggctgcaaagtctatgc 189  Q
    |||||||||||||||||| ||||||||||||||||||||| |||| | ||||||| |||||||||||||  ||||||||||||||||||||||||||    
T  11708988 aaatgtcaaacatggtggcttgttggccttattgtcaataatagggttgtggaattggaaagctagcat-atagggtggtggctgcaaagtctatgc 11708893  T

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Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 93 - 188
Target Start/End: Complemental strand, 11716504 - 11716410
Alignment:
Q  93 aaatgtcaaacatggtggtttgttggccttattgtcaatagtaggatggtggaataggaaagctagcatggtagggtggtggctgcaaagtctatg 188  Q
    |||||||||||||||||| ||||||||||||||||||||| |||| | ||||||| | |||||||||||  |||||||||||||||||||||||||    
T  11716504 aaatgtcaaacatggtggcttgttggccttattgtcaataatagggttgtggaattgaaaagctagcat-atagggtggtggctgcaaagtctatg 11716410  T

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Target: chr7; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 113 - 189
Target Start/End: Complemental strand, 13166902 - 13166826
Alignment:
Q  113 tgttggccttattgtcaatagtaggatggtggaataggaaagctagcatggtagggtggtggctgcaaagtctatgc 189  Q
    ||||||||||||||||||||||||| ||||||||| |||||| ||||||||||| |||||||||||||| |||||||    
T  13166902 tgttggccttattgtcaatagtagggtggtggaattggaaaggtagcatggtagcgtggtggctgcaaattctatgc 13166826  T

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Target: chr7; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 65 - 186
Target Start/End: Complemental strand, 37063126 - 37063012
Alignment:
Q  65 aatggaaacacaatctagtaataatagaaaatgtcaaacatggtggtttgttggccttattgtcaatagtaggatggtggaataggaaagctagcatggt 164  Q
    |||| |||||||||| ||||| |||||| | ||||||||||||||| ||||||| ||      ||| |||||| || |||||| ||||||||||||||||    
T  37063126 aatgaaaacacaatccagtaaaaatagatattgtcaaacatggtggcttgttggtct------caa-agtagggtgatggaatgggaaagctagcatggt 37063034  T
Q  165 agggtggtggctgcaaagtcta 186  Q
    ||||||||||||||||||||||    
T  37063033 agggtggtggctgcaaagtcta 37063012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 11709073 - 11709026
Alignment:
Q  17 tggccttatttatagtagtcctagaggccaaatggtagttgaaatagt 64  Q
    ||||||||||||||| | |||||||||||| ||||||| |||||||||    
T  11709073 tggccttatttatagcaatcctagaggccatatggtagctgaaatagt 11709026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 13160538 - 13160492
Alignment:
Q  19 gccttatttatagtagtcctagaggccaaatggtagttgaaatagta 65  Q
    ||||||||||||| | |||||||||||| ||||||| ||||||||||    
T  13160538 gccttatttatagcaatcctagaggccatatggtagctgaaatagta 13160492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 73; Significance: 5e-33; HSPs: 4)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 93 - 189
Target Start/End: Original strand, 24389 - 24484
Alignment:
Q  93 aaatgtcaaacatggtggtttgttggccttattgtcaatagtaggatggtggaataggaaagctagcatggtagggtggtggctgcaaagtctatgc 189  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||  ||||||||||||||||||||||||||    
T  24389 aaatgtcaaacatggtggcttgttggccttattgtcaatagtagggtggtggaattggaaagctagcat-atagggtggtggctgcaaagtctatgc 24484  T

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Target: scaffold0015; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 93 - 189
Target Start/End: Original strand, 29705 - 29800
Alignment:
Q  93 aaatgtcaaacatggtggtttgttggccttattgtcaatagtaggatggtggaataggaaagctagcatggtagggtggtggctgcaaagtctatgc 189  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||  ||||||||||||||||||||||||||    
T  29705 aaatgtcaaacatggtggcttgttggccttattgtcaatagtagggtggtggaattggaaagctagcat-atagggtggtggctgcaaagtctatgc 29800  T

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Target: scaffold0015; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 24304 - 24351
Alignment:
Q  17 tggccttatttatagtagtcctagaggccaaatggtagttgaaatagt 64  Q
    ||||||||||||||| | |||||||||||| ||||||| |||||||||    
T  24304 tggccttatttatagcaatcctagaggccatatggtagctgaaatagt 24351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 29620 - 29667
Alignment:
Q  17 tggccttatttatagtagtcctagaggccaaatggtagttgaaatagt 64  Q
    ||||||||||||||| | |||||||||||| ||||||| |||||||||    
T  29620 tggccttatttatagcaatcctagaggccatatggtagctgaaatagt 29667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 5e-33; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 93 - 189
Target Start/End: Complemental strand, 91701 - 91606
Alignment:
Q  93 aaatgtcaaacatggtggtttgttggccttattgtcaatagtaggatggtggaataggaaagctagcatggtagggtggtggctgcaaagtctatgc 189  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||  ||||||||||||||||||||||||||    
T  91701 aaatgtcaaacatggtggcttgttggccttattgtcaatagtagggtggtggaattggaaagctagcat-atagggtggtggctgcaaagtctatgc 91606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 93 - 189
Target Start/End: Complemental strand, 86384 - 86289
Alignment:
Q  93 aaatgtcaaacatggtggtttgttggccttattgtcaatagtaggatggtggaataggaaagctagcatggtagggtggtggctgcaaagtctatgc 189  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||  ||||||||| ||||||||||||||||    
T  86384 aaatgtcaaacatggtggcttgttggccttattgtcaatagtagggtggtggaattggaaagctagcat-atagggtggtagctgcaaagtctatgc 86289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 93 - 189
Target Start/End: Original strand, 29010960 - 29011055
Alignment:
Q  93 aaatgtcaaacatggtggtttgttggccttattgtcaatagtaggatggtggaataggaaagctagcatggtagggtggtggctgcaaagtctatgc 189  Q
    |||||||||||||||||| ||||||||||||||||| |||||||| ||||||||| |||||||||||||  ||||||||||||||||||||||||||    
T  29010960 aaatgtcaaacatggtggcttgttggccttattgtcgatagtagggtggtggaattggaaagctagcat-atagggtggtggctgcaaagtctatgc 29011055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 93 - 189
Target Start/End: Complemental strand, 19802855 - 19802760
Alignment:
Q  93 aaatgtcaaacatggtggtttgttggccttattgtcaatagtaggatggtggaataggaaagctagcatggtagggtggtggctgcaaagtctatgc 189  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||  |||||||||||||| ||| |||||||    
T  19802855 aaatgtcaaacatggtggcttgttggccttattgtcaatagtagggtggtggaattggaaagctagcat-atagggtggtggctgaaaactctatgc 19802760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 98 - 189
Target Start/End: Complemental strand, 34949446 - 34949355
Alignment:
Q  98 tcaaacatggtggtttgttggccttattgtcaatagtaggatggtggaataggaaagctagcatggtagggtggtggctgcaaagtctatgc 189  Q
    ||||||||| | ||||||| | ||||  |||||||||||  | |||||||   ||||||||||| |||||||||||||||||||||||||||    
T  34949446 tcaaacatgatagtttgtttggcttaaagtcaatagtagactcgtggaatgaaaaagctagcatcgtagggtggtggctgcaaagtctatgc 34949355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 91794 - 91739
Alignment:
Q  9 gaagaaaatggccttatttatagtagtcctagaggccaaatggtagttgaaatagt 64  Q
    ||||||| ||||||||||||||| | |||||||||||| ||||||| |||||||||    
T  91794 gaagaaagtggccttatttatagcaatcctagaggccatatggtagctgaaatagt 91739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 86469 - 86422
Alignment:
Q  17 tggccttatttatagtagtcctagaggccaaatggtagttgaaatagt 64  Q
    ||||||||||||||| | |||||||||||| ||||||| |||||||||    
T  86469 tggccttatttatagcaatcctagaggccatatggtagctgaaatagt 86422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 19802940 - 19802893
Alignment:
Q  17 tggccttatttatagtagtcctagaggccaaatggtagttgaaatagt 64  Q
    ||||||||||||||| | |||||||||||| ||||||| |||||||||    
T  19802940 tggccttatttatagcaatcctagaggccatatggtagctgaaatagt 19802893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 69 - 123
Target Start/End: Original strand, 26491902 - 26491956
Alignment:
Q  69 gaaacacaatctagtaataatagaaaatgtcaaacatggtggtttgttggcctta 123  Q
    ||||||||||||||||| |||||| | ||||||||||||||  ||||| ||||||    
T  26491902 gaaacacaatctagtaaaaatagacattgtcaaacatggtgacttgtttgcctta 26491956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 5e-33; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 93 - 189
Target Start/End: Original strand, 16772644 - 16772739
Alignment:
Q  93 aaatgtcaaacatggtggtttgttggccttattgtcaatagtaggatggtggaataggaaagctagcatggtagggtggtggctgcaaagtctatgc 189  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||  ||||||||||||||||||||||||||    
T  16772644 aaatgtcaaacatggtggcttgttggccttattgtcaatagtagggtggtggaattggaaagctagcat-atagggtggtggctgcaaagtctatgc 16772739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 93 - 189
Target Start/End: Complemental strand, 32708126 - 32708031
Alignment:
Q  93 aaatgtcaaacatggtggtttgttggccttattgtcaatagtaggatggtggaataggaaagctagcatggtagggtggtggctgcaaagtctatgc 189  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||  ||||||||||||||||||||||||||    
T  32708126 aaatgtcaaacatggtggcttgttggccttattgtcaatagtagggtggtggaattggaaagctagcat-atagggtggtggctgcaaagtctatgc 32708031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 93 - 189
Target Start/End: Original strand, 16777980 - 16778075
Alignment:
Q  93 aaatgtcaaacatggtggtttgttggccttattgtcaatagtaggatggtggaataggaaagctagcatggtagggtggtggctgcaaagtctatgc 189  Q
    |||||||||| ||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||  ||||||||||||||||||||||||||    
T  16777980 aaatgtcaaatatggtggcttgttggccttattgtcaatagtagggtggtggaattggaaagctagcat-atagggtggtggctgcaaagtctatgc 16778075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 32703727 - 32703663
Alignment:
Q  124 ttgtcaatagtaggatggtggaataggaaagctagcatggtagggtggtggctgcaaagtctatgc 189  Q
    |||||||||||||| ||||||||| |||||||||||||  ||||||||||||||||||||||||||    
T  32703727 ttgtcaatagtagggtggtggaattggaaagctagcat-atagggtggtggctgcaaagtctatgc 32703663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 16777895 - 16777942
Alignment:
Q  17 tggccttatttatagtagtcctagaggccaaatggtagttgaaatagt 64  Q
    ||||||||||||||| | |||||||||||| ||||||| |||||||||    
T  16777895 tggccttatttatagcaatcctagaggccatatggtagctgaaatagt 16777942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 32708211 - 32708164
Alignment:
Q  17 tggccttatttatagtagtcctagaggccaaatggtagttgaaatagt 64  Q
    ||||||||||||||| | |||||||||||| ||||||| |||||||||    
T  32708211 tggccttatttatagcaatcctagaggccatatggtagctgaaatagt 32708164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 93 - 189
Target Start/End: Complemental strand, 14026930 - 14026833
Alignment:
Q  93 aaatgtcaaacatggtggtttgttggccttattgtcaatagta--ggatggtggaataggaaagctagcatggtagggtggtggctgcaaagtctatgc 189  Q
    |||||||||||||||||| ||||||||||||||||||||||||  || ||||||||| |||||| ||||||  ||||||||||||||||||||||||||    
T  14026930 aaatgtcaaacatggtggcttgttggccttattgtcaatagtagggggtggtggaattggaaagttagcat-atagggtggtggctgcaaagtctatgc 14026833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 6746776 - 6746812
Alignment:
Q  9 gaagaaaatggccttatttatagtagtcctagaggcc 45  Q
    |||| |||||||||||||||||||| |||||||||||    
T  6746776 gaaggaaatggccttatttatagtaatcctagaggcc 6746812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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