View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18870_low_2 (Length: 455)
Name: NF18870_low_2
Description: NF18870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18870_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 13 - 435
Target Start/End: Original strand, 29772209 - 29772639
Alignment:
| Q |
13 |
aatataagattgaatatgaaaattactaatcgcaattataagcataggtcataatagtctttcannnnnnnnaaacaataatagtatttcannnnnnnnn |
112 |
Q |
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| T |
29772209 |
aatataagattgaatatgaaaattattaatcgcaattataaatataggtcataatggtctttcatttttcttaaacaataatagtatttcatttttttta |
29772308 |
T |
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| Q |
113 |
gaaggataattgtatt-aatttttgtaaattggaaaatacatannnnnnnnnn------agggatggaaaatacatatttgaaattcttaaat-atcaca |
204 |
Q |
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| T |
29772309 |
aaaggataattgtgtttaatttttgtaaattggaaaatacttttttttttttttttttgagggatggaaaatacatatttgaaat-cttaaattatcaca |
29772407 |
T |
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| Q |
205 |
tattcacatttacgttggcttccagtgctactgtttctcgttgcaactttaccaaaagagatgtaacnnnnnnnnnnnnnnnn-gaggtttgagtaatga |
303 |
Q |
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| T |
29772408 |
tattcacatttacgttggcttccagtgctgctgtttctcgttgcaactttaccaaaagagatgtaacattttttttatttttttgaggtttgagtaatga |
29772507 |
T |
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| Q |
304 |
caccaaaatatagattggatgaattggggttcattctgcttgttatgtttttgggtgactgagaaggtgcaaagcccaattttatgcgtgtgaaaatctg |
403 |
Q |
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| T |
29772508 |
caccaaaatatagattggatgaattggggttcattctgcttgttatgtttttgggtgactgagaaggtgcaaaacccaattttatgcgtgtgaaaatctg |
29772607 |
T |
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| Q |
404 |
ctcctgtaattcaaggcagccagctatgtacg |
435 |
Q |
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| T |
29772608 |
ctcctgtaattcaaggcagccagctatgtacg |
29772639 |
T |
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