View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18870_low_4 (Length: 376)
Name: NF18870_low_4
Description: NF18870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18870_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 24573085 - 24572725
Alignment:
| Q |
1 |
aaactttttcaagtgtttcatttcgaggcgacacgagcactttcccggcatttcctcccatctcttggaaattctcaattattttctctggatcttcgtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24573085 |
aaactttttcaagtgtttcatttcgaggcgacacgagcactttcccggcatttcctcccatctcttggaaattctcaattattttctctggatcttcgtg |
24572986 |
T |
|
| Q |
101 |
accaccgttgttctcaaatgccccttcaattcttgatgcaatcacccacatgcctttccttcaatgatcaatttttaaaattattttactcacaattaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24572985 |
accaccgttgttctcaaatgccccttcaattcttgatgcaatcacccacatgcctttccttcaatgatcaatttttaaaattattttactcacaattaat |
24572886 |
T |
|
| Q |
201 |
atatctattcatgatgttcacaaatcttagttcaaccgnnnnnnntatcaagattgttatgtcagatgcaatgattaagattcgaacccctgcttcttca |
300 |
Q |
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|||| ||| |||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
24572885 |
atatatatacatggtgttcacaaatcttagttcaaccgaaaaaaatatcaaaattgttatgtcagatgcaatgattgagatttgaacccctgcttcttca |
24572786 |
T |
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| Q |
301 |
cacttttttaaggattgggcttcaccacttgcgtgtttaagttttcaatagttattgtcat |
361 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
24572785 |
cacttttttaaggattgggtttcaccacttgcgtgtttaagttttcaatagttattgtcat |
24572725 |
T |
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