View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18870_low_5 (Length: 349)

Name: NF18870_low_5
Description: NF18870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18870_low_5
NF18870_low_5
[»] chr1 (1 HSPs)
chr1 (32-334)||(6594017-6594310)


Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 32 - 334
Target Start/End: Original strand, 6594017 - 6594310
Alignment:
Q  32 cactcaatttcacatgttgttagagtggtttcaatacatactaatcacataaattgtccacgttgattcgttcatataatactttaatactttaaacagt 131  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||        |||||    
T  6594017 cactcaatttcacatgttgttagagtggtttcaatacatattaatcacataaattgtccacgttgattcgttcatataatactttaa--------acagt 6594108  T
Q  132 taacaaatattgaatcgtatgatatagtgttagggttacgaaaacacctacatagtaa-ggataaaataaaacaactccataataatacttgaccaaaga 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6594109 taacaaatattgaatcgtatgatatagtgttagggttacgaaaacacctacatagtaaaggataaaataaaacaactccataataatacttgaccaaaga 6594208  T
Q  231 cagcaatatgacataatacatgttcttgatcaaccagtgttcatgcgatatttacagtaacaataagaatgatgaaattaacaacacaagtatgacatat 330  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6594209 cagcaat--gacataatacatgttcttgatcaaccagtgttcatgcgatatttacagtaacaataagaatgatcaaattaacaacacaagtatgacatat 6594306  T

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