View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18870_low_6 (Length: 301)
Name: NF18870_low_6
Description: NF18870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18870_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 13 - 154
Target Start/End: Complemental strand, 41738689 - 41738548
Alignment:
| Q |
13 |
ttaagcctttttcctcttataattgtattggtaaacctatcttgttttatgtgactactcatcataaaattctcatctttgtgatactgaaattacttgt |
112 |
Q |
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| T |
41738689 |
ttaagcctttttcctcttataattgtattggtaaacctatcttgttttatgtgactactcatcataaaattctcatctttgtgatactgaaattacttgt |
41738590 |
T |
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| Q |
113 |
ttgttaattctttgctgccaatattcagtcttatatatcctt |
154 |
Q |
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| T |
41738589 |
ttgttaattctttgctgccaatattcagtcttatatatcctt |
41738548 |
T |
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Target: chr5 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 130 - 298
Target Start/End: Complemental strand, 4603610 - 4603444
Alignment:
| Q |
130 |
ccaatattcagtcttatatatccttgtatattttctaattgtgtgctaaatttttccttttaacccgagtgatgcttttctctagctctgattataccct |
229 |
Q |
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| T |
4603610 |
ccaacattcagtcttgtatatcattgtgtagtttataattgtgtgctaaatttttccttttaacctgagtgatgcttttctgtag--ctgattataccct |
4603513 |
T |
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| Q |
230 |
aaatgttctttcatttcaaccatcctatttagatcctatggttaacattttcctccgtcgatgggctat |
298 |
Q |
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| T |
4603512 |
aaactttctttcatctcaaccatcctatttagatcttatggtcaacattttcctctgttgatgtgctat |
4603444 |
T |
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