View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18871_high_5 (Length: 365)
Name: NF18871_high_5
Description: NF18871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18871_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 317
Target Start/End: Complemental strand, 10843658 - 10843356
Alignment:
| Q |
16 |
aaacattcttattttttacaaacttgagaagtaacaaacnnnnnnncaatct--gtctcatttcttccttgaaaatatcaatggaaggagaaggtgataa |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10843658 |
aaacattcttattttttacaaacttgagaagtaacaaacaaaaaaacaatctctgtctcatttcttccttgaaaatatcaatggaaggagaaggtgataa |
10843559 |
T |
|
| Q |
114 |
gtggcagaggtgtgatgaagatatctctctgaatgttcctcttttaacagaacatgaaggaaaccaaatttctggtagcggtcccaacgacaatattctt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10843558 |
gtggcagaggtgtgatgaagatatctctctgaatgttcctcttttaacagaacatgaaggaaaccaaatttctggtagcggtcccaacgacaatattctt |
10843459 |
T |
|
| Q |
214 |
accacttgtttccttaaaacttgtttcaatggtctcaatgctttaacaggtaaaccttattaaccctaattgttttgttttgtaaaatgcaagctgtttt |
313 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10843458 |
accacttctttccttaaaacttgtttcaatggtctcaatgctttaacaggt-aaccttattaaccctagttgttttgttttgtaaaatgcaagctgtttt |
10843360 |
T |
|
| Q |
314 |
tgga |
317 |
Q |
| |
|
|||| |
|
|
| T |
10843359 |
tgga |
10843356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 76 - 291
Target Start/End: Complemental strand, 2701035 - 2700824
Alignment:
| Q |
76 |
tcttccttgaaaatatcaatggaaggagaaggtgataagtggcagaggtgtgatgaagatatctctctgaatgttcctcttttaacagaacatgaaggaa |
175 |
Q |
| |
|
|||| ||||||| ||||||||||||| |||||||||||||||||| |||| ||||||| | |||||||| |||| | || |||| |||||||||| |
|
|
| T |
2701035 |
tctttcttgaaactatcaatggaaggtgaaggtgataagtggcagcagtgtagtgaagatgttgctctgaatattcccttaatagcagagcatgaaggaa |
2700936 |
T |
|
| Q |
176 |
accaaatttctggtagcggtcccaacgacaatattcttaccacttgtttccttaaaacttgtttcaatggtctcaatgctttaacaggtaaaccttatta |
275 |
Q |
| |
|
|||||||||||| | | ||||| ||||| | ||||| | |||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
2700935 |
gccaaatttctggcaacaatcccagtaacaatgtc---accacatcattccttaaaacttgtttcaatggtctcaatgctttatcaggt-aaccttatta |
2700840 |
T |
|
| Q |
276 |
accctaattgttttgt |
291 |
Q |
| |
|
|| || ||||||||| |
|
|
| T |
2700839 |
actttagttgttttgt |
2700824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University