View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18871_low_1 (Length: 677)

Name: NF18871_low_1
Description: NF18871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18871_low_1
NF18871_low_1
[»] chr7 (1 HSPs)
chr7 (18-666)||(29405972-29406638)


Alignment Details
Target: chr7 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 18 - 666
Target Start/End: Complemental strand, 29406638 - 29405972
Alignment:
Q  18 ataatttccagttttcctggaagaagttgtcaaattcgtgagattttgcgtcttttgggacctttgaattctccattacttcctttgtttgtgtatggag 117  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  29406638 ataatttccagttttcctggaagaagtagtcaaattcatgagattgtgcgtcttttgggaccgttgaattcgccattacttcctttgtttgtgtatggag 29406539  T
Q  118 ggtcttctactggaaaaaccagtatcattcttcaattattcagacatctcaataggcctcttgtttattctagctgtaggacttgttataaccagcgtat 217  Q
    || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29406538 gggcttctaccggaaaaaccagtatcattcttcaattattcagacatctcaataggcctcttgtttattctagctgtaggacgtgttataaccagcgtat 29406439  T
Q  218 cttgtttgagtctgttcttaatcagttacttctccatagtaaaaatgcttctaattgttatgctaatgctaaacgctgtgaaagaccttctgattttgtc 317  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||| ||||||||||||    
T  29406438 cttgtttgagtctgttctgaatcagttacttctccatagtaaaaatgctgctaattgttatgcaaatgcgaaacgctgtgaaagaccgtctgattttgtc 29406339  T
Q  318 aattttcttcgcgaagcattgaccggtgttataaataatctgaaggagaaatcaga------------------gaaggtacatgatggggtaacgggaa 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  ||||||||||||||||  ||||||||    
T  29406338 aattttcttcgcgaagcattgaccggtgttataaataatctgaaggagaaatcagagaagatgatctcaaaaaagaaggtacatgatgggaaaacgggaa 29406239  T
Q  400 acttgatctacttggtatttgacaattttcatcttgttagagattgggataaaagctcgactttattgcccttactgtttaatctccatgatatgttaaa 499  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  29406238 acatgatctacttggtatttgacaattttcatcttgttagagattgggataaaagctcgactatattgcccttactgtttaatctctatgatatgttaaa 29406139  T
Q  500 gatgcccgaggttggtctgattttcatcagcagtacttcaccagataccttttacactaacatgggttatgtggagcctatccccttttactttcctgat 599  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  29406138 gatgctcgaggttggtctgattttcatcagcagtacttcaccagataccttttacactaacatgggttatgtggagcctatccccatttactttcctgat 29406039  T
Q  600 tacacagaaggtgatattcgtcaaatcctattgaggaaccaagcaaaccagaagttgtattcttcat 666  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29406038 tacacagaaggtgatattcgtcaaatcctattgaggaaccaagcaaaccagaagttgtattcgtcat 29405972  T

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