View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18871_low_3 (Length: 459)
Name: NF18871_low_3
Description: NF18871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18871_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 163 - 403
Target Start/End: Complemental strand, 4278031 - 4277786
Alignment:
| Q |
163 |
actttcacaaaatagaaaaacatcatcacccttattggagccataccagtaggggtgagaatgatcgtacttacaacaagtacaagaaggtttggtgatg |
262 |
Q |
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| T |
4278031 |
actttcacaaaatagaaaaacatcatcacccttgctggagccatattagctggggtgggaatgatcgtacttacaacaagtacaagaaggtttggtgatg |
4277932 |
T |
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| Q |
263 |
gtgaagagaatgatgg-----agtgtggagctgggaggatattgatgtatgtttgattgtgtgttgtgtttcggnnnnnnnagagagacatagtaagacc |
357 |
Q |
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| T |
4277931 |
atggagagaataagggttgaatttgtggagctgggaggatacggatgtatgtttgattgtgtgttgtgtttcgttttttttggagggacatagtaagacc |
4277832 |
T |
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| Q |
358 |
aaattccgcaacactatagtggtaggatgtctatataattgctttg |
403 |
Q |
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| T |
4277831 |
aaattccacaacactatagtggtataatgtctctataattgctttg |
4277786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 281 - 328
Target Start/End: Complemental strand, 4272634 - 4272587
Alignment:
| Q |
281 |
tgtggagctgggaggatattgatgtatgtttgattgtgtgttgtgttt |
328 |
Q |
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| T |
4272634 |
tgtggagctgggaggacatggatgtatgtttgactgtgtgttgtgttt |
4272587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 346 - 403
Target Start/End: Complemental strand, 4272345 - 4272288
Alignment:
| Q |
346 |
catagtaagaccaaattccgcaacactatagtggtaggatgtctatataattgctttg |
403 |
Q |
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| T |
4272345 |
catagtaagaccgaattccgcaacactatagtggtattgtgtcactataattgctttg |
4272288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 24109473 - 24109512
Alignment:
| Q |
15 |
tagcatagggcaacgttcgataaagggtgggagacttaaa |
54 |
Q |
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| T |
24109473 |
tagcatagggcgacgttcgataaagggtgggagacttaaa |
24109512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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