View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18872_high_1 (Length: 1014)

Name: NF18872_high_1
Description: NF18872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18872_high_1
NF18872_high_1
[»] chr1 (6 HSPs)
chr1 (271-1013)||(23531024-23531768)
chr1 (20-165)||(23530075-23530224)
chr1 (979-1014)||(9630561-9630596)
chr1 (977-1011)||(5944381-5944415)
chr1 (979-1013)||(46940748-46940782)
chr1 (234-267)||(23530962-23530995)
[»] chr6 (2 HSPs)
chr6 (973-1014)||(10339048-10339089)
chr6 (979-1012)||(32511606-32511639)
[»] chr4 (4 HSPs)
chr4 (977-1014)||(29205552-29205589)
chr4 (979-1014)||(12895214-12895249)
chr4 (977-1014)||(715543-715580)
chr4 (977-1014)||(752869-752906)
[»] chr2 (2 HSPs)
chr2 (978-1014)||(10535684-10535720)
chr2 (976-1014)||(26769606-26769644)
[»] chr7 (2 HSPs)
chr7 (979-1014)||(32093954-32093989)
chr7 (838-891)||(29865165-29865218)
[»] chr5 (2 HSPs)
chr5 (979-1014)||(2436995-2437030)
chr5 (976-1014)||(22423761-22423799)
[»] chr3 (5 HSPs)
chr3 (979-1014)||(40052396-40052431)
chr3 (977-1014)||(8842413-8842450)
chr3 (977-1014)||(11610593-11610630)
chr3 (977-1014)||(20503549-20503586)
chr3 (981-1014)||(25775591-25775624)
[»] scaffold0793 (1 HSPs)
scaffold0793 (977-1014)||(4819-4856)


Alignment Details
Target: chr1 (Bit Score: 533; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 271 - 1013
Target Start/End: Original strand, 23531024 - 23531768
Alignment:
Q  271 tattataagggtttgcgtagcaagattttttctattgttggaaataggtataattttctatgactatgatgtaaaattgtatatacttgatccgtatggt 370  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23531024 tattataaggctttgcttagcaagattttttctattgttggaaataggtataattttctatgactatgatgtaaaattgtatatacttgatccgtatggt 23531123  T
Q  371 tatatataagaagttttgtttcagtatattgatgtttccattccagtacttgattcttttttaacatgcactctaaaattgatcttttgatttagaaagt 470  Q
    ||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  23531124 tatatataag---ttttgtttcagtatattgatgtttccattccagtacttgattcttttttaacatgcactatgaaattgatcttttgatttagaaagt 23531220  T
Q  471 gttagatatggactttttattaaggaatgtgaaatatatttatttgtagattctaattgagagacaccgatcaaaatgtaatgctagtttatcatttaac 570  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||| ||||    
T  23531221 gttagatatggactttttattaaggaatgtgaaatatatttatttgtagattctaattaagagacatcgatcaaaatgtaatgatagtttatcatctaac 23531320  T
Q  571 tgttcaaagagacgttagaagttataggataaaataaatcttctattatctacgagatatcaagatgcctgcatagtaataagtcaagtcatagttgaga 670  Q
    ||   | ||| ||||||||||||||||||||||||||||||||||||||||||| || ||| |||||| || |  | ||||||| |||||||||||||||    
T  23531321 tg---agagaaacgttagaagttataggataaaataaatcttctattatctacgggacatcgagatgcatgtagcgcaataagtgaagtcatagttgaga 23531417  T
Q  671 cattacgag--tatataatcgatcaaaaaatactttagaggattagttcatgaaa----cttaatctcaataatatta--tctcttttattgttttcaat 762  Q
    ||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||    ||||||||| | |||||||  ||||| ||||||||  ||||    
T  23531418 cattaagagtatatataatcgatcaagaaatactttagaggattagttcatgaaactagcttaatctccacaatattatctctctgttattgttcccaat 23531517  T
Q  763 ttaatgcttagatcttttcatagaaaaacaaccctttttcaaacataaaactagaataattgttgaaagac-aatgatatcgcatgagtccatgtggata 861  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  23531518 ttaatgcttagatcttttcatagaaaaacaaccctttttcaaacataaaactagaataattgttgaaagacaaatgatatggcatgagtccatgtggata 23531617  T
Q  862 caataaactaaaatacttacttttgatactgcaaaaatggatttatcattactgtccattagttagtctcatccttcttgttgataacaaagggagagaa 961  Q
    ||||||||||||||||||||||||||||||||||||  || |||||||||| |||||||||||| |||||| ||||||||||||||| ||||||||||||    
T  23531618 caataaactaaaatacttacttttgatactgcaaaacagg-tttatcattaatgtccattagtttgtctcacccttcttgttgataataaagggagagaa 23531716  T
Q  962 aatttaataggttgcatctatgaagcacgaacactcctccgattaggcgtgt 1013  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  23531717 aatttaataggttgcatctatgaagcacgaacactcctccgattaagcgtgt 23531768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 23530075 - 23530224
Alignment:
Q  20 acataatggctcaactaactagacatgtacttgttaacatgatgaaaggagttatatagatggaagttcaaggcatgcatctttttgtct----nnnnnn 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  23530075 acataatggctcaactaactagacatgtacttgttaacatgatgaaaggagttatatagatggaagttcaaggcatgcatctttttgtctaaaaaaaaag 23530174  T
Q  116 ngaagtccaaggcatccaaagttcaatgctctagtctccggccatcaccg 165  Q
     ||||| |||||||||||| |||||||| |||||||||||||||||||||    
T  23530175 agaagttcaaggcatccaaggttcaatgttctagtctccggccatcaccg 23530224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 979 - 1014
Target Start/End: Original strand, 9630561 - 9630596
Alignment:
Q  979 ctatgaagcacgaacactcctccgattaggcgtgtc 1014  Q
    |||||||||||||||||||||| |||||||||||||    
T  9630561 ctatgaagcacgaacactcctcggattaggcgtgtc 9630596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 977 - 1011
Target Start/End: Complemental strand, 5944415 - 5944381
Alignment:
Q  977 atctatgaagcacgaacactcctccgattaggcgt 1011  Q
    |||||||||||||||||||||||| ||||||||||    
T  5944415 atctatgaagcacgaacactcctcggattaggcgt 5944381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 979 - 1013
Target Start/End: Original strand, 46940748 - 46940782
Alignment:
Q  979 ctatgaagcacgaacactcctccgattaggcgtgt 1013  Q
    |||||||||||||||||||||| ||||||||||||    
T  46940748 ctatgaagcacgaacactcctcggattaggcgtgt 46940782  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 267
Target Start/End: Original strand, 23530962 - 23530995
Alignment:
Q  234 gccaacatcacaatcatttcatctctttttgatt 267  Q
    ||||||||||||||||||||||||||| ||||||    
T  23530962 gccaacatcacaatcatttcatctcttcttgatt 23530995  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 973 - 1014
Target Start/End: Original strand, 10339048 - 10339089
Alignment:
Q  973 ttgcatctatgaagcacgaacactcctccgattaggcgtgtc 1014  Q
    ||||| |||||||||||| |||||||||||||||||||||||    
T  10339048 ttgcacctatgaagcacggacactcctccgattaggcgtgtc 10339089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 979 - 1012
Target Start/End: Original strand, 32511606 - 32511639
Alignment:
Q  979 ctatgaagcacgaacactcctccgattaggcgtg 1012  Q
    |||||||||||| |||||||||||||||||||||    
T  32511606 ctatgaagcacggacactcctccgattaggcgtg 32511639  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 977 - 1014
Target Start/End: Complemental strand, 29205589 - 29205552
Alignment:
Q  977 atctatgaagcacgaacactcctccgattaggcgtgtc 1014  Q
    |||||||||||||||||||||||| |||||||||||||    
T  29205589 atctatgaagcacgaacactcctcggattaggcgtgtc 29205552  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 979 - 1014
Target Start/End: Original strand, 12895214 - 12895249
Alignment:
Q  979 ctatgaagcacgaacactcctccgattaggcgtgtc 1014  Q
    |||||||||||||||||||||| |||||||||||||    
T  12895214 ctatgaagcacgaacactcctcggattaggcgtgtc 12895249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 977 - 1014
Target Start/End: Original strand, 715543 - 715580
Alignment:
Q  977 atctatgaagcacgaacactcctccgattaggcgtgtc 1014  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  715543 atctatgaagcacggacactcctcggattaggcgtgtc 715580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 977 - 1014
Target Start/End: Original strand, 752869 - 752906
Alignment:
Q  977 atctatgaagcacgaacactcctccgattaggcgtgtc 1014  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  752869 atctatgaagcacggacactcctcggattaggcgtgtc 752906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 978 - 1014
Target Start/End: Original strand, 10535684 - 10535720
Alignment:
Q  978 tctatgaagcacgaacactcctccgattaggcgtgtc 1014  Q
    ||||||||||||||||||||||| |||||||||||||    
T  10535684 tctatgaagcacgaacactcctcggattaggcgtgtc 10535720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 976 - 1014
Target Start/End: Complemental strand, 26769644 - 26769606
Alignment:
Q  976 catctatgaagcacgaacactcctccgattaggcgtgtc 1014  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  26769644 catctatgaagcacggacactcctcggattaggcgtgtc 26769606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 979 - 1014
Target Start/End: Original strand, 32093954 - 32093989
Alignment:
Q  979 ctatgaagcacgaacactcctccgattaggcgtgtc 1014  Q
    |||||||||||||||||||||| |||||||||||||    
T  32093954 ctatgaagcacgaacactcctcggattaggcgtgtc 32093989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 838 - 891
Target Start/End: Original strand, 29865165 - 29865218
Alignment:
Q  838 atatcgcatgagtccatgtggatacaataaactaaaatacttacttttgatact 891  Q
    ||||||||  |||||||||||| || ||| || |||||||||||||||||||||    
T  29865165 atatcgcactagtccatgtggagacgatacacaaaaatacttacttttgatact 29865218  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 979 - 1014
Target Start/End: Complemental strand, 2437030 - 2436995
Alignment:
Q  979 ctatgaagcacgaacactcctccgattaggcgtgtc 1014  Q
    |||||||||||||||||||||| |||||||||||||    
T  2437030 ctatgaagcacgaacactcctcggattaggcgtgtc 2436995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 976 - 1014
Target Start/End: Original strand, 22423761 - 22423799
Alignment:
Q  976 catctatgaagcacgaacactcctccgattaggcgtgtc 1014  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  22423761 catctatgaagcacggacactcctcggattaggcgtgtc 22423799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 979 - 1014
Target Start/End: Complemental strand, 40052431 - 40052396
Alignment:
Q  979 ctatgaagcacgaacactcctccgattaggcgtgtc 1014  Q
    |||||||||||||||||||||| |||||||||||||    
T  40052431 ctatgaagcacgaacactcctcggattaggcgtgtc 40052396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 977 - 1014
Target Start/End: Complemental strand, 8842450 - 8842413
Alignment:
Q  977 atctatgaagcacgaacactcctccgattaggcgtgtc 1014  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  8842450 atctatgaagcacggacactcctcggattaggcgtgtc 8842413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 977 - 1014
Target Start/End: Complemental strand, 11610630 - 11610593
Alignment:
Q  977 atctatgaagcacgaacactcctccgattaggcgtgtc 1014  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  11610630 atctatgaagcacggacactcctcagattaggcgtgtc 11610593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 977 - 1014
Target Start/End: Complemental strand, 20503586 - 20503549
Alignment:
Q  977 atctatgaagcacgaacactcctccgattaggcgtgtc 1014  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  20503586 atctatgaagcacggacactcctcggattaggcgtgtc 20503549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 981 - 1014
Target Start/End: Complemental strand, 25775624 - 25775591
Alignment:
Q  981 atgaagcacgaacactcctccgattaggcgtgtc 1014  Q
    |||||||||||||||||||| |||||||||||||    
T  25775624 atgaagcacgaacactcctcggattaggcgtgtc 25775591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0793 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 977 - 1014
Target Start/End: Original strand, 4819 - 4856
Alignment:
Q  977 atctatgaagcacgaacactcctccgattaggcgtgtc 1014  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  4819 atctatgaagcacggacactcctcggattaggcgtgtc 4856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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