View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18872_high_2 (Length: 540)
Name: NF18872_high_2
Description: NF18872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18872_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 18 - 528
Target Start/End: Complemental strand, 29007115 - 29006608
Alignment:
| Q |
18 |
tttgtgtctgtgcttcatagcgatcgacgaattataaataaaaatgaatgaaaaattaaagagaatgagttagttatacctggaaagttagcgaagaaaa |
117 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29007115 |
tttgtgtccgtgcttcatagcaatcgacgaattataaataaagatgaatgaaaaattaaagagaatgagttagttatacctggaaagttagcgaagaaaa |
29007016 |
T |
|
| Q |
118 |
cgaaaagtgcaagagaaattctagtattggacgcagacattggagtga--gagagagaggatgagaaatgaaagaaaatggaagttgaagaagtccttta |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29007015 |
cgaaaagtgcaagagaaattctagtattggacgcagacattggagggatagagagagaggttgagaaatgaaagaaaatggaagttgaagaagtccttta |
29006916 |
T |
|
| Q |
216 |
tttcaaaatgttgttagtttgaaggaagagtggaagacttgacgtggccacacacgattggttggtgggttcgggagtctagtctaagatacgtgtgcat |
315 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
29006915 |
tttcaaaatgttgtta-tttgaaggaagaatggaagacttgacgtggccacacgcgattggttggtgggttggggagtctagtctaagatacgtgtgcat |
29006817 |
T |
|
| Q |
316 |
tacgcacctgattgctgctaattcaataactttgccgccaataacttccattgacttcataataatcaactactatcatcacgactcagtctagaatgcg |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
29006816 |
tacgcacctgattgctgctaattcaataactttgccgccaataacttccattgacttcataataatca---actatcatcacgactcagtctagaatgca |
29006720 |
T |
|
| Q |
416 |
taggattaagttgattggttttgtggtcaatttttataatttgtttatgctattgtgctattgtcatccctattgtcgtcaatttttatgattttttatt |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
29006719 |
taggattaagttgattggttttgtggtcaatttttataatttgtttatgctattgtgctattgtcatccctattgtcgtcaatttttatga-tttttatt |
29006621 |
T |
|
| Q |
516 |
tatgctagatatt |
528 |
Q |
| |
|
||||||||||||| |
|
|
| T |
29006620 |
tatgctagatatt |
29006608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University