View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18872_low_1 (Length: 1014)
Name: NF18872_low_1
Description: NF18872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18872_low_1 |
 | |
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| [»] chr6 (2 HSPs) |
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| [»] chr4 (4 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr3 (5 HSPs) |
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| [»] scaffold0793 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 533; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 271 - 1013
Target Start/End: Original strand, 23531024 - 23531768
Alignment:
| Q |
271 |
tattataagggtttgcgtagcaagattttttctattgttggaaataggtataattttctatgactatgatgtaaaattgtatatacttgatccgtatggt |
370 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23531024 |
tattataaggctttgcttagcaagattttttctattgttggaaataggtataattttctatgactatgatgtaaaattgtatatacttgatccgtatggt |
23531123 |
T |
|
| Q |
371 |
tatatataagaagttttgtttcagtatattgatgtttccattccagtacttgattcttttttaacatgcactctaaaattgatcttttgatttagaaagt |
470 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
23531124 |
tatatataag---ttttgtttcagtatattgatgtttccattccagtacttgattcttttttaacatgcactatgaaattgatcttttgatttagaaagt |
23531220 |
T |
|
| Q |
471 |
gttagatatggactttttattaaggaatgtgaaatatatttatttgtagattctaattgagagacaccgatcaaaatgtaatgctagtttatcatttaac |
570 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||| |||| |
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|
| T |
23531221 |
gttagatatggactttttattaaggaatgtgaaatatatttatttgtagattctaattaagagacatcgatcaaaatgtaatgatagtttatcatctaac |
23531320 |
T |
|
| Q |
571 |
tgttcaaagagacgttagaagttataggataaaataaatcttctattatctacgagatatcaagatgcctgcatagtaataagtcaagtcatagttgaga |
670 |
Q |
| |
|
|| | ||| ||||||||||||||||||||||||||||||||||||||||||| || ||| |||||| || | | ||||||| ||||||||||||||| |
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|
| T |
23531321 |
tg---agagaaacgttagaagttataggataaaataaatcttctattatctacgggacatcgagatgcatgtagcgcaataagtgaagtcatagttgaga |
23531417 |
T |
|
| Q |
671 |
cattacgag--tatataatcgatcaaaaaatactttagaggattagttcatgaaa----cttaatctcaataatatta--tctcttttattgttttcaat |
762 |
Q |
| |
|
||||| ||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||| | ||||||| ||||| |||||||| |||| |
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|
| T |
23531418 |
cattaagagtatatataatcgatcaagaaatactttagaggattagttcatgaaactagcttaatctccacaatattatctctctgttattgttcccaat |
23531517 |
T |
|
| Q |
763 |
ttaatgcttagatcttttcatagaaaaacaaccctttttcaaacataaaactagaataattgttgaaagac-aatgatatcgcatgagtccatgtggata |
861 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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|
| T |
23531518 |
ttaatgcttagatcttttcatagaaaaacaaccctttttcaaacataaaactagaataattgttgaaagacaaatgatatggcatgagtccatgtggata |
23531617 |
T |
|
| Q |
862 |
caataaactaaaatacttacttttgatactgcaaaaatggatttatcattactgtccattagttagtctcatccttcttgttgataacaaagggagagaa |
961 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||| |||||| ||||||||||||||| |||||||||||| |
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|
| T |
23531618 |
caataaactaaaatacttacttttgatactgcaaaacagg-tttatcattaatgtccattagtttgtctcacccttcttgttgataataaagggagagaa |
23531716 |
T |
|
| Q |
962 |
aatttaataggttgcatctatgaagcacgaacactcctccgattaggcgtgt |
1013 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
23531717 |
aatttaataggttgcatctatgaagcacgaacactcctccgattaagcgtgt |
23531768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 23530075 - 23530224
Alignment:
| Q |
20 |
acataatggctcaactaactagacatgtacttgttaacatgatgaaaggagttatatagatggaagttcaaggcatgcatctttttgtct----nnnnnn |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23530075 |
acataatggctcaactaactagacatgtacttgttaacatgatgaaaggagttatatagatggaagttcaaggcatgcatctttttgtctaaaaaaaaag |
23530174 |
T |
|
| Q |
116 |
ngaagtccaaggcatccaaagttcaatgctctagtctccggccatcaccg |
165 |
Q |
| |
|
||||| |||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
23530175 |
agaagttcaaggcatccaaggttcaatgttctagtctccggccatcaccg |
23530224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 979 - 1014
Target Start/End: Original strand, 9630561 - 9630596
Alignment:
| Q |
979 |
ctatgaagcacgaacactcctccgattaggcgtgtc |
1014 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9630561 |
ctatgaagcacgaacactcctcggattaggcgtgtc |
9630596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 977 - 1011
Target Start/End: Complemental strand, 5944415 - 5944381
Alignment:
| Q |
977 |
atctatgaagcacgaacactcctccgattaggcgt |
1011 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |
|
|
| T |
5944415 |
atctatgaagcacgaacactcctcggattaggcgt |
5944381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 979 - 1013
Target Start/End: Original strand, 46940748 - 46940782
Alignment:
| Q |
979 |
ctatgaagcacgaacactcctccgattaggcgtgt |
1013 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |
|
|
| T |
46940748 |
ctatgaagcacgaacactcctcggattaggcgtgt |
46940782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 267
Target Start/End: Original strand, 23530962 - 23530995
Alignment:
| Q |
234 |
gccaacatcacaatcatttcatctctttttgatt |
267 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
23530962 |
gccaacatcacaatcatttcatctcttcttgatt |
23530995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 973 - 1014
Target Start/End: Original strand, 10339048 - 10339089
Alignment:
| Q |
973 |
ttgcatctatgaagcacgaacactcctccgattaggcgtgtc |
1014 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10339048 |
ttgcacctatgaagcacggacactcctccgattaggcgtgtc |
10339089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 979 - 1012
Target Start/End: Original strand, 32511606 - 32511639
Alignment:
| Q |
979 |
ctatgaagcacgaacactcctccgattaggcgtg |
1012 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |
|
|
| T |
32511606 |
ctatgaagcacggacactcctccgattaggcgtg |
32511639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 977 - 1014
Target Start/End: Complemental strand, 29205589 - 29205552
Alignment:
| Q |
977 |
atctatgaagcacgaacactcctccgattaggcgtgtc |
1014 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
29205589 |
atctatgaagcacgaacactcctcggattaggcgtgtc |
29205552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 979 - 1014
Target Start/End: Original strand, 12895214 - 12895249
Alignment:
| Q |
979 |
ctatgaagcacgaacactcctccgattaggcgtgtc |
1014 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |
|
|
| T |
12895214 |
ctatgaagcacgaacactcctcggattaggcgtgtc |
12895249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 977 - 1014
Target Start/End: Original strand, 715543 - 715580
Alignment:
| Q |
977 |
atctatgaagcacgaacactcctccgattaggcgtgtc |
1014 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
715543 |
atctatgaagcacggacactcctcggattaggcgtgtc |
715580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 977 - 1014
Target Start/End: Original strand, 752869 - 752906
Alignment:
| Q |
977 |
atctatgaagcacgaacactcctccgattaggcgtgtc |
1014 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
752869 |
atctatgaagcacggacactcctcggattaggcgtgtc |
752906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 978 - 1014
Target Start/End: Original strand, 10535684 - 10535720
Alignment:
| Q |
978 |
tctatgaagcacgaacactcctccgattaggcgtgtc |
1014 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
10535684 |
tctatgaagcacgaacactcctcggattaggcgtgtc |
10535720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 976 - 1014
Target Start/End: Complemental strand, 26769644 - 26769606
Alignment:
| Q |
976 |
catctatgaagcacgaacactcctccgattaggcgtgtc |
1014 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
26769644 |
catctatgaagcacggacactcctcggattaggcgtgtc |
26769606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 979 - 1014
Target Start/End: Original strand, 32093954 - 32093989
Alignment:
| Q |
979 |
ctatgaagcacgaacactcctccgattaggcgtgtc |
1014 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |
|
|
| T |
32093954 |
ctatgaagcacgaacactcctcggattaggcgtgtc |
32093989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 838 - 891
Target Start/End: Original strand, 29865165 - 29865218
Alignment:
| Q |
838 |
atatcgcatgagtccatgtggatacaataaactaaaatacttacttttgatact |
891 |
Q |
| |
|
|||||||| |||||||||||| || ||| || ||||||||||||||||||||| |
|
|
| T |
29865165 |
atatcgcactagtccatgtggagacgatacacaaaaatacttacttttgatact |
29865218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 979 - 1014
Target Start/End: Complemental strand, 2437030 - 2436995
Alignment:
| Q |
979 |
ctatgaagcacgaacactcctccgattaggcgtgtc |
1014 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2437030 |
ctatgaagcacgaacactcctcggattaggcgtgtc |
2436995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 976 - 1014
Target Start/End: Original strand, 22423761 - 22423799
Alignment:
| Q |
976 |
catctatgaagcacgaacactcctccgattaggcgtgtc |
1014 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
22423761 |
catctatgaagcacggacactcctcggattaggcgtgtc |
22423799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 979 - 1014
Target Start/End: Complemental strand, 40052431 - 40052396
Alignment:
| Q |
979 |
ctatgaagcacgaacactcctccgattaggcgtgtc |
1014 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |
|
|
| T |
40052431 |
ctatgaagcacgaacactcctcggattaggcgtgtc |
40052396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 977 - 1014
Target Start/End: Complemental strand, 8842450 - 8842413
Alignment:
| Q |
977 |
atctatgaagcacgaacactcctccgattaggcgtgtc |
1014 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
8842450 |
atctatgaagcacggacactcctcggattaggcgtgtc |
8842413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 977 - 1014
Target Start/End: Complemental strand, 11610630 - 11610593
Alignment:
| Q |
977 |
atctatgaagcacgaacactcctccgattaggcgtgtc |
1014 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
11610630 |
atctatgaagcacggacactcctcagattaggcgtgtc |
11610593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 977 - 1014
Target Start/End: Complemental strand, 20503586 - 20503549
Alignment:
| Q |
977 |
atctatgaagcacgaacactcctccgattaggcgtgtc |
1014 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
20503586 |
atctatgaagcacggacactcctcggattaggcgtgtc |
20503549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 981 - 1014
Target Start/End: Complemental strand, 25775624 - 25775591
Alignment:
| Q |
981 |
atgaagcacgaacactcctccgattaggcgtgtc |
1014 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
25775624 |
atgaagcacgaacactcctcggattaggcgtgtc |
25775591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0793 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0793
Description:
Target: scaffold0793; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 977 - 1014
Target Start/End: Original strand, 4819 - 4856
Alignment:
| Q |
977 |
atctatgaagcacgaacactcctccgattaggcgtgtc |
1014 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
4819 |
atctatgaagcacggacactcctcggattaggcgtgtc |
4856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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