View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18873_high_1 (Length: 576)
Name: NF18873_high_1
Description: NF18873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18873_high_1 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 198 - 576
Target Start/End: Complemental strand, 8359131 - 8358761
Alignment:
| Q |
198 |
ttttactattgatccctccaatgagtgtatgatcctttgtttaccactcctnnnnnnnnttgatattaaaaactgcatttggtgtggtagaaaagatctt |
297 |
Q |
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| T |
8359131 |
ttttactattgatccctccaatgagtgtatgatcctttgtttaccactcctaaaaaaaattgatattaaaaactgcatttggtgtggtagaaaagatctt |
8359032 |
T |
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| Q |
298 |
atcgtacaagctcctcttcttgaaaacatttccatagaacaagacgacaaattttgtaataaggtatcatct------------atccgatcaatcaaat |
385 |
Q |
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| T |
8359031 |
atcgtacaagctcctcttcttgaaaacatttccatagaacaagacgacaaattttgtaataaggtatcatctcatggttcgcctatccgatcaatcaaat |
8358932 |
T |
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| Q |
386 |
ttaatggtcgcactgtatttatacaagttgcactgtattttaccccgattgatgatcagggaatacataaatttgcgaaagagattctcagttttgtaat |
485 |
Q |
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| T |
8358931 |
ttaatggtcgcact--------------------gtattttaccccaattgatgatcagggaatacataaatttgcgaaagagattctcagttttgtaat |
8358852 |
T |
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| Q |
486 |
tttcaaatgatgtagcatagaattggtgataatagaaaagaaaatgatattcactgcacctaaaattgtttcaagttatattcttggacat |
576 |
Q |
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| T |
8358851 |
tttcaaatgatgtagcatagaattggtgataatagaaaagaaaatgatattcactgcatctaaaattgtttcaagttattttcttgtacat |
8358761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 21 - 342
Target Start/End: Original strand, 8316877 - 8317213
Alignment:
| Q |
21 |
gagagtaaaaagtgttcgaatccattcttctttttataaactccccttctctgttctttcatcttattatcttttcaaatccccctcattggaagaatta |
120 |
Q |
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| T |
8316877 |
gagagtaaaaattcttcggatccattcatctttttatcagctccccttttctgctcttacatctcattatcttttcaactgcacctccttagaagaatta |
8316976 |
T |
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| Q |
121 |
gaattggtactcaaaatgatctccac---------------catgtccattcatttaggacacctaaaattcctcaagttttatggagtctcttttacta |
205 |
Q |
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| T |
8316977 |
gaattggtactccatgtgtcctccaccataaaatttcccagcatttctgttcattttggacacctaaaactcctcaagttgtatgggatcttttttaaga |
8317076 |
T |
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| Q |
206 |
ttgatccctccaatgagtgtatgatcctttgtttaccactcctnnnnnnnnttgatattaaaaactgcatttggtgtggtagaaaagatcttatcgtaca |
305 |
Q |
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| T |
8317077 |
ttgatacctctagcgactgtttgacccttaatttaccacttcttagaaagtttgatatcaaaaactgcaattggtcgggtggaaaagatcttattgtaga |
8317176 |
T |
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| Q |
306 |
agctcctcttcttgaaaacatttccatagaacaagac |
342 |
Q |
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| T |
8317177 |
agctcctctacttgaaattgtttccatagaacaagac |
8317213 |
T |
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