View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18873_high_18 (Length: 246)
Name: NF18873_high_18
Description: NF18873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18873_high_18 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 28008636 - 28008881
Alignment:
| Q |
1 |
ttatagtttcagagagcatctttttctttacagcatatttcccagactttttcattgattcaaatagcatcagaaaaccaaatcaaataacttagccaaa |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28008636 |
ttatagttccagagagcatctttttctttacagcatatttcccagactttttcattgattcaaatagcatcagaaaaccaaatcaaataacttagccaaa |
28008735 |
T |
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| Q |
101 |
aaataataaggctgtggtaaaggtnnnnnnnnctgtagtagtaattgacacaacacatacatatgaagagttgggtggggaatctaattattatctcact |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28008736 |
aaataataaggctgtggtaaaggtaaaaaaaactgtagtagtaattgacacaacacatacatatgaagagttgggtggggaatctaattattatctcact |
28008835 |
T |
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| Q |
201 |
ccctgaaaagggtaaaagaataaatagtgacactgcaatctatgat |
246 |
Q |
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| T |
28008836 |
ccctgaaaagggtaaaagaataaatagtgacaatgcaatctatgat |
28008881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 8e-42; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 8343258 - 8343156
Alignment:
| Q |
1 |
ttatagtttcagagagcatctttttctttacagcatatttcccagactttttcattgattcaaatagcatcagaaaaccaaatcaaataacttagccaaa |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
8343258 |
ttatagttctagagagcatctttttctttacagcatatttcccagactttttcattgattcaactagcatcagaaaaccaaatcaaataacatagccaaa |
8343159 |
T |
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| Q |
101 |
aaa |
103 |
Q |
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||| |
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| T |
8343158 |
aaa |
8343156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 8343618 - 8343516
Alignment:
| Q |
1 |
ttatagtttcagagagcatctttttctttacagcatatttcccagactttttcattgattcaaatagcatcagaaaaccaaatcaaataacttagccaaa |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
8343618 |
ttatagttctagagagcatctttttctttacagcatatttcccagactttttcattgattcaactagcatcagaaaaccaaatcaaataacatagccaaa |
8343519 |
T |
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| Q |
101 |
aaa |
103 |
Q |
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||| |
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| T |
8343518 |
aaa |
8343516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 8343503 - 8343447
Alignment:
| Q |
147 |
gacacaacacatacatatgaagagttgggtggggaatctaattattatctcactccc |
203 |
Q |
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||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
8343503 |
gacacaacacacacttatgaagagttgggtggggaatctaattattatctcactccc |
8343447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 8343143 - 8343087
Alignment:
| Q |
147 |
gacacaacacatacatatgaagagttgggtggggaatctaattattatctcactccc |
203 |
Q |
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||||||||||| || | |||||||||||||||||||||||||||||||||||||||| |
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| T |
8343143 |
gacacaacacacacttctgaagagttgggtggggaatctaattattatctcactccc |
8343087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 196 - 243
Target Start/End: Complemental strand, 8342929 - 8342882
Alignment:
| Q |
196 |
tcactccctgaaaagggtaaaagaataaatagtgacactgcaatctat |
243 |
Q |
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||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
8342929 |
tcactccctcaaaagggtaaaagaataaatagtgacaatgcaatctat |
8342882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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