View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18873_high_19 (Length: 243)
Name: NF18873_high_19
Description: NF18873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18873_high_19 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 24268665 - 24268907
Alignment:
| Q |
1 |
aggaacttctatatcatgccctcatgtttctgccattgttgctcttctcaaaacaatttatcctaactggagtcctgcagcttttaaatctgctatcatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
24268665 |
aggaacttctatatcatgccctcatgtttctgccattgttgctcttctcaaaacaatttatcctaattggagtcctgcagcttttaaatctgctatcatg |
24268764 |
T |
|
| Q |
101 |
actacaggtaaattaataaaattacataactttgctaaacatagcacaaattaagaaactgtcccaaaagatatgctacatttgacaagtgcatgagaga |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24268765 |
actacaagtaaattaataaaattacataactttgctaaacatagcacaaattaagaaactgtcccaaaagatatgctacatttgacaagtgcatgagaga |
24268864 |
T |
|
| Q |
201 |
caaagaatctttatcaatttgtctttcctaacttgccaatatt |
243 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||| |
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| T |
24268865 |
tagagaatctttatcaatttgtctttcctaacttgccaatatt |
24268907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 31049760 - 31049651
Alignment:
| Q |
1 |
aggaacttctatatcatgccctcatgtttctgccattgttgctcttctcaaaacaatttatcctaactggagtcctgcagcttttaaatctgctatcatg |
100 |
Q |
| |
|
|||||||||||| || || ||||||||| ||| || || || ||| |||||||| || ||||||| |||||||| |||||| ||||||| ||||| ||| |
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| T |
31049760 |
aggaacttctatgtcttgtcctcatgttgctggcactgctggacttatcaaaacacttcatcctaattggagtccagcagctattaaatcagctattatg |
31049661 |
T |
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| Q |
101 |
actacaggta |
110 |
Q |
| |
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|| ||||||| |
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| T |
31049660 |
accacaggta |
31049651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 31144832 - 31144731
Alignment:
| Q |
1 |
aggaacttctatatcatgccctcatgtttctgccattgttgctcttctcaaaacaatttatcctaactggagtcctgcagcttttaaatctgctatcatg |
100 |
Q |
| |
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|||||||||||| || || ||||||||| || || || || ||| |||||||| || ||||||| ||||||||||||||| ||||||| ||||||||| |
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| T |
31144832 |
aggaacttctatgtcttgtcctcatgttgttggcactgctggacttatcaaaacacttcatcctaattggagtcctgcagctattaaatcagctatcatg |
31144733 |
T |
|
| Q |
101 |
ac |
102 |
Q |
| |
|
|| |
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|
| T |
31144732 |
ac |
31144731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 31162656 - 31162555
Alignment:
| Q |
1 |
aggaacttctatatcatgccctcatgtttctgccattgttgctcttctcaaaacaatttatcctaactggagtcctgcagcttttaaatctgctatcatg |
100 |
Q |
| |
|
|||||||||||| || || ||||||||| ||| || || || ||| |||||||| || ||||||| |||||||| |||||| ||||||| ||||||||| |
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| T |
31162656 |
aggaacttctatgtcttgtcctcatgttgctggcactgctggacttatcaaaacacttcatcctaattggagtccagcagctattaaatcagctatcatg |
31162557 |
T |
|
| Q |
101 |
ac |
102 |
Q |
| |
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|| |
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|
| T |
31162556 |
ac |
31162555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 31202981 - 31203090
Alignment:
| Q |
1 |
aggaacttctatatcatgccctcatgtttctgccattgttgctcttctcaaaacaatttatcctaactggagtcctgcagcttttaaatctgctatcatg |
100 |
Q |
| |
|
|||||||||||| || |||||||||||| | | ||||| | ||| |||||||| | ||||||| |||||||| |||||| ||||||| ||||||||| |
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| T |
31202981 |
aggaacttctatgtcttgccctcatgttgccggcattgcgggacttatcaaaacattgcatcctaattggagtccagcagctattaaatcagctatcatg |
31203080 |
T |
|
| Q |
101 |
actacaggta |
110 |
Q |
| |
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|| ||||||| |
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|
| T |
31203081 |
accacaggta |
31203090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 31062083 - 31061982
Alignment:
| Q |
1 |
aggaacttctatatcatgccctcatgtttctgccattgttgctcttctcaaaacaatttatcctaactggagtcctgcagcttttaaatctgctatcatg |
100 |
Q |
| |
|
|||||||||||| || |||||||||||| ||| | || || ||| |||||||| || ||||||| |||||||| |||||| ||||||| ||||| ||| |
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| T |
31062083 |
aggaacttctatgtcttgccctcatgttgctgggactgctggacttatcaaaacacttcatcctaattggagtccagcagctattaaatcagctattatg |
31061984 |
T |
|
| Q |
101 |
ac |
102 |
Q |
| |
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|| |
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|
| T |
31061983 |
ac |
31061982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 42315247 - 42315347
Alignment:
| Q |
2 |
ggaacttctatatcatgccctcatgtttctgccattgttgctcttctcaaaacaatttatcctaactggagtcctgcagcttttaaatctgctatcatga |
101 |
Q |
| |
|
||||||||||| ||||||||||||| |||| ||| | | |||||||||||| || ||||||| |||||||| |||||| | ||||| ||||| |||| |
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| T |
42315247 |
ggaacttctatggcatgccctcatgtgtctggcatagcaggccttctcaaaacacttcatcctaaatggagtccagcagctatcaaatcagctattatga |
42315346 |
T |
|
| Q |
102 |
c |
102 |
Q |
| |
|
| |
|
|
| T |
42315347 |
c |
42315347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 37016464 - 37016355
Alignment:
| Q |
1 |
aggaacttctatatcatgccctcatgtttctgccattgttgctcttctcaaaacaatttatcctaactggagtcctgcagcttttaaatctgctatcatg |
100 |
Q |
| |
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||||||||| || || || ||||||||| ||| |||||| | ||||||||| ||| || |||||| |||||||| || || | |||||||| |||||| |
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| T |
37016464 |
aggaacttcaatgtcttgtcctcatgttgctggcattgtcggtcttctcaagacacttcatcctagttggagtccagctgccatcaaatctgccatcatg |
37016365 |
T |
|
| Q |
101 |
actacaggta |
110 |
Q |
| |
|
||||| |||| |
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|
| T |
37016364 |
actaccggta |
37016355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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