View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18873_high_2 (Length: 500)
Name: NF18873_high_2
Description: NF18873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18873_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 16 - 498
Target Start/End: Original strand, 8548620 - 8549111
Alignment:
| Q |
16 |
ataatactcgatgatattataaaataacttataaattgagcaattttttgtgctaaaatgacttatgtaatatagaatcgagaatgttttataagtgcgt |
115 |
Q |
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| T |
8548620 |
ataatactcaatgatattataaaataacttataaattgagcaatttttagtgctaaaatgacttatgtaatatagaatcgagagtgttttataagtgcgt |
8548719 |
T |
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| Q |
116 |
gctaaaatggcagctctatgaacattgccatagaggaggtcggagttcgaatttcaagttctcctcttttcagtatttatagtgtgtgagtctaaccgtt |
215 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |
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| T |
8548720 |
gctaaaatggcagctctatgaacattgccgtagaggaggtcggagttcgaatttcaagttctcctcttctcagtatttatagtgtgtgagtctaaccatt |
8548819 |
T |
|
| Q |
216 |
aggtatttagnnnnnnnntagaatggagagtgtaaattacnnnnnnnaggtggactta-gagttctttcnnnnnnngaaa--------ggtggacttaga |
306 |
Q |
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||||||||| |||||||||||||||| ||||| ||||||||||| |||||||||| ||| | |||||||||| |
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| T |
8548820 |
aggtatttaagaaaaaaatagaatggagagtgtatattactttttttaggtggacttaagagttctttcaaaaaaaaaaaaaaaaaaagttggacttaga |
8548919 |
T |
|
| Q |
307 |
gtaagggcttgtgtatgtttggtctgcctctgaattttgtcttctacaacactaattttggtccatgcattaagctacttttgagtgataagagggtttg |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8548920 |
gtaagggcttgtgtatgtttggtctgcctctgaattttgtcttctacaacactaattttggtccatgcattaagctacttttgagtgataagagggtttg |
8549019 |
T |
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| Q |
407 |
aggaggacttcattggtttttcaactgtgtattggcaatgcatatggatatggttgatattttgttcgatgctctttaggctctgtgctgct |
498 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8549020 |
aggaggacttcattggtttttcaactgtgcattggcaatgcatatggatatggttgatattttgttcgatgctctttaggctctgtgttgct |
8549111 |
T |
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