View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18873_high_20 (Length: 239)
Name: NF18873_high_20
Description: NF18873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18873_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 13666491 - 13666290
Alignment:
| Q |
18 |
actatttgggtcgtttgaaaagtaataaacatttagctttttcatcaaaaggagctaaatcaccaacgtttattgaataagcttcattccttttggtaaa |
117 |
Q |
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| T |
13666491 |
actatttggatcgtttgaaaagtaataaacatttagctttttcatcaaaaggagctaaatcaccaacgtttattgaataagcttcattccttttggtaga |
13666392 |
T |
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| Q |
118 |
tgaaatcgaaatatgttatgttcgatatcgactaccatctttgatgacttaatccactttaatttcatgcttaagatgagttgctttcctgtttatttcg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13666391 |
tgaaatcgaaatatgttatgttcgatatcgactaccatctttgatgacttaatccactttaatttcatgcttaagatgagttgctttcctgtttatttcg |
13666292 |
T |
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| Q |
218 |
at |
219 |
Q |
| |
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|| |
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| T |
13666291 |
at |
13666290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 13725766 - 13725565
Alignment:
| Q |
18 |
actatttgggtcgtttgaaaagtaataaacatttagctttttcatcaaaaggagctaaatcaccaacgtttattgaataagcttcattccttttggtaaa |
117 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
13725766 |
actatttggatcgtttgaaaagtaataaacatttagctttttcatcaaaaggagctaaatcaccaacgtttattgaataagcttcattccttttggtaga |
13725667 |
T |
|
| Q |
118 |
tgaaatcgaaatatgttatgttcgatatcgactaccatctttgatgacttaatccactttaatttcatgcttaagatgagttgctttcctgtttatttcg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13725666 |
tgaaatcgaaatatgttatgttcgatatcgactaccatctttgatgacttaatccactttaatttcatgcttaagatgagttgctttcctgtttatttcg |
13725567 |
T |
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| Q |
218 |
at |
219 |
Q |
| |
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|| |
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| T |
13725566 |
at |
13725565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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