View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18873_high_21 (Length: 236)
Name: NF18873_high_21
Description: NF18873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18873_high_21 |
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Alignment Details
Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 6527768 - 6527909
Alignment:
| Q |
1 |
ttctcttttgtaaaatctttttcatagagcttactatcctttttaacatgccaccacattttcgctgcacaaatttccaatgctgcaagtgttgatccaa |
100 |
Q |
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||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
6527768 |
ttctcctttgtaaaatctttttcatagagcttaccgtcctttttaacatgccaccacattttctctgcacaaatttccaatgatgcaagtgttgatccaa |
6527867 |
T |
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| Q |
101 |
tggacacaatttgcgcattaccataagccatttccatcaatg |
142 |
Q |
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| T |
6527868 |
tggacacaagttgaggatcaccatatgccattcccatcaatg |
6527909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 6505055 - 6505196
Alignment:
| Q |
1 |
ttctcttttgtaaaatctttttcatagagcttactatcctttttaacatgccaccacattttcgctgcacaaatttccaatgctgcaagtgttgatccaa |
100 |
Q |
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|||||||||||||| |||| |||||| | || | || ||| |||||||||||||||||||| | | || ||||||||||| || ||||||||||||| |
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| T |
6505055 |
ttctcttttgtaaactcttcttcatacaatttcccattcttcttaacatgccaccacattttggttccaagaatttccaatgatgttagtgttgatccaa |
6505154 |
T |
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| Q |
101 |
tggacacaatttgcgcattaccataagccatttccatcaatg |
142 |
Q |
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| T |
6505155 |
tggacacaagttgagaatcaccatatgctattcccatcaatg |
6505196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 6516710 - 6516574
Alignment:
| Q |
1 |
ttctcttttgtaaaatctttttcatagagcttactatcctttttaacatgccaccacattttcgctgcacaaatttccaatgctgcaagtgttgatccaa |
100 |
Q |
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| T |
6516710 |
ttctcttttgtaaactcttcatcatacaatttcccattctttttaacatgccaccacattttggttccaagaatttccaatgatgttagtgttgatgcaa |
6516611 |
T |
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| Q |
101 |
tggacacaatttgcgcattaccataagccatttccat |
137 |
Q |
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| T |
6516610 |
ttgacacaagttgaggatcaccatatgccattcccat |
6516574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 6473646 - 6473555
Alignment:
| Q |
1 |
ttctcttttgtaaaatctttttcatagagcttactatcctt-tttaacatgccaccacattttcgctgcacaaatttccaatgctgcaagtgt |
92 |
Q |
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| T |
6473646 |
ttctcttttgtaaaatcttcctcatagagatt-ctctccttcttttacatgccaccacattttagcagcaagaatttccaatgatgtaagtgt |
6473555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 35244599 - 35244458
Alignment:
| Q |
1 |
ttctcttttgtaaaatctttttcatagagcttactatcctttttaacatgccaccacattttcgctgcacaaatttccaatgctgcaagtgttgatccaa |
100 |
Q |
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|
|||||||||||||||||||||||||| | || | | |||||||||||||||||||| ||| || |||||||||||||||| ||||||||||||||||| |
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| T |
35244599 |
ttctcttttgtaaaatctttttcatacatatttccactctttttaacatgccaccacaatttagcagcacaaatttccaatgatgcaagtgttgatccaa |
35244500 |
T |
|
| Q |
101 |
tggacacaatttgcgcattaccataagccatttccatcaatg |
142 |
Q |
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||||||||||||| ||| ||||||||||||| ||||||||| |
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| T |
35244499 |
tggacacaatttgaccatcaccataagccattcccatcaatg |
35244458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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