View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18873_high_22 (Length: 229)
Name: NF18873_high_22
Description: NF18873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18873_high_22 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 1156158 - 1155951
Alignment:
| Q |
19 |
aaatataagagagttagaactatatagatttatcaccttctctgttttacctatgtactgtttaaagttttcacactagactgattatgcatcagttgct |
118 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1156158 |
aaatataagagagttaaaactatatagatttatcaccttcactgttttacctatgtactgtttaaagttttcacactagactgattatgcatcagttgct |
1156059 |
T |
|
| Q |
119 |
gatttcacactgttatgtttatgcagagttacagcatattgaaggcagctttaagctcaacatctgctctaacgaatggtctccgtcacttgctaaccta |
218 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1156058 |
gatttcacactgttatgtttgtgcagagttacagcatattgaaggcagctttaagctcaacatctgctctaacgaatggtctccgtcacttgctaaccta |
1155959 |
T |
|
| Q |
219 |
agtaatta |
226 |
Q |
| |
|
|||||||| |
|
|
| T |
1155958 |
agtaatta |
1155951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 140 - 215
Target Start/End: Complemental strand, 23284329 - 23284254
Alignment:
| Q |
140 |
tgcagagttacagcatattgaaggcagctttaagctcaacatctgctctaacgaatggtctccgtcacttgctaac |
215 |
Q |
| |
|
|||||||| ||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
23284329 |
tgcagagtcacaacatattcaaggcagctttaagctcaacgcctgctctaacgaatggtctccgtcacttgttaac |
23284254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 120 - 215
Target Start/End: Complemental strand, 23250179 - 23250084
Alignment:
| Q |
120 |
atttcacactgttatgtttatgcagagttacagcatattgaaggcagctttaagctcaacatctgctctaacgaatggtctccgtcacttgctaac |
215 |
Q |
| |
|
|||||||| |||| |||| | |||||| || |||||| ||||| |||||| ||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
23250179 |
atttcacattgttgtgttggttcagagtcgcaacatatttaaggctgctttatgctcaacgtctgctctaacgaatggtctccgtcacttgttaac |
23250084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 23321571 - 23321509
Alignment:
| Q |
154 |
atattgaaggcagctttaagctcaacatctgctctaacgaatggtctccgtcacttgctaacc |
216 |
Q |
| |
|
|||||||| || ||||||| |||||||||||||||||| ||||||||| |||||||| ||||| |
|
|
| T |
23321571 |
atattgaaagctgctttaacctcaacatctgctctaacaaatggtctcagtcacttgttaacc |
23321509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University