View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18873_high_23 (Length: 217)

Name: NF18873_high_23
Description: NF18873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18873_high_23
NF18873_high_23
[»] chr5 (2 HSPs)
chr5 (1-217)||(26104176-26104392)
chr5 (2-64)||(33532320-33532382)
[»] chr3 (8 HSPs)
chr3 (2-64)||(25013396-25013458)
chr3 (2-61)||(24990983-24991042)
chr3 (3-73)||(25017871-25017941)
chr3 (2-58)||(25014523-25014579)
chr3 (2-73)||(24971791-24971862)
chr3 (164-211)||(24971929-24971976)
chr3 (117-216)||(25027226-25027325)
chr3 (3-73)||(25027345-25027415)
[»] chr2 (1 HSPs)
chr2 (2-64)||(16868965-16869027)


Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 26104392 - 26104176
Alignment:
Q  1 agtgccatggaactttacattgtgcacagattaacccatgacaagaagggcattcacaacttgtgacaccctcctccaccattaaacgagaacaattctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26104392 agtgccatggaactttacattgtgcacagattaacccatgacaagaagggcattcacaacttgtgacaccctcctccaccattaaacgagaacaattctt 26104293  T
Q  101 cttcttttttgaggggaaaagagaacaattattgtaagggcagtaaaatatttgctttgtagaaatagaagactcaaaaattgcatattcccaatcagca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26104292 cttcttttttgaggggaaaagagaacaattattgtaagggcagtaaaatatttgctttgtataaatagaagactcaaaaattgcatattcccaatcagca 26104193  T
Q  201 ataacttttttaggtaa 217  Q
    |||||||||||||||||    
T  26104192 ataacttttttaggtaa 26104176  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 33532320 - 33532382
Alignment:
Q  2 gtgccatggaactttacattgtgcacagattaacccatgacaagaagggcattcacaacttgt 64  Q
    |||||||||||||||||||||  |||| | ||||| ||||||||||| |||||||||||||||    
T  33532320 gtgccatggaactttacattgcacacaaaataacctatgacaagaagagcattcacaacttgt 33532382  T

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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 25013458 - 25013396
Alignment:
Q  2 gtgccatggaactttacattgtgcacagattaacccatgacaagaagggcattcacaacttgt 64  Q
    |||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  25013458 gtgccacggaactttacattgtgcacagaataacctatgacaagaagggcattcacaacttgt 25013396  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 24991042 - 24990983
Alignment:
Q  2 gtgccatggaactttacattgtgcacagattaacccatgacaagaagggcattcacaact 61  Q
    ||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||    
T  24991042 gtgccatggaactttacattgtgcacagaataacctatgacaataagggcattcacaact 24990983  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 25017941 - 25017871
Alignment:
Q  3 tgccatggaactttacattgtgcacagattaacccatgacaagaagggcattcacaacttgtgacaccctc 73  Q
    ||||||||||||| |||||||||||||| || || |||||||||||| |||||||||||||| ||||||||    
T  25017941 tgccatggaacttcacattgtgcacagaatagcctatgacaagaaggacattcacaacttgtaacaccctc 25017871  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 25014579 - 25014523
Alignment:
Q  2 gtgccatggaactttacattgtgcacagattaacccatgacaagaagggcattcaca 58  Q
    ||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||    
T  25014579 gtgccatggaactttacattgtgcacagaataacctatgacaataagggcattcaca 25014523  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 24971791 - 24971862
Alignment:
Q  2 gtgccatggaactttacattgtgcacagattaacccatgacaagaagggcattcacaacttgtgacaccctc 73  Q
    |||||||||||| ||||||||| ||||||  | || ||||||||| || |||||||||||||| ||||||||    
T  24971791 gtgccatggaacgttacattgtacacagaagagcctatgacaagacggacattcacaacttgtaacaccctc 24971862  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 24971929 - 24971976
Alignment:
Q  164 aatagaagactcaaaaattgcatattcccaatcagcaataactttttt 211  Q
    ||||||||||||| |||||||| ||||||||||| |||| ||||||||    
T  24971929 aatagaagactcataaattgcagattcccaatcaacaatgactttttt 24971976  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 216
Target Start/End: Complemental strand, 25027325 - 25027226
Alignment:
Q  117 aaaagagaacaattattgtaagggcagtaaaatatttgctttgtagaaatagaagactcaaaaattgcatattcccaatcagcaataacttttttaggta 216  Q
    |||||||||||||| |  ||||||||||| | | ||||| |  ||| ||||||||| ||| |||||||| ||||||| ||| |||| |||| ||||||||    
T  25027325 aaaagagaacaattctcataagggcagtacattttttgcatcatagcaatagaagattcataaattgcagattcccattcaacaatgacttgtttaggta 25027226  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 25027415 - 25027345
Alignment:
Q  3 tgccatggaactttacattgtgcacagattaacccatgacaagaagggcattcacaacttgtgacaccctc 73  Q
    ||||| |||||||||||||||||||| |  | || ||||||||| || |||||||||||||| ||| ||||    
T  25027415 tgccacggaactttacattgtgcacaaaacagcctatgacaagatggacattcacaacttgtaacaacctc 25027345  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 16869027 - 16868965
Alignment:
Q  2 gtgccatggaactttacattgtgcacagattaacccatgacaagaagggcattcacaacttgt 64  Q
    |||||||||||||||||||||  |||| | ||||| ||||||||||| |||||||||||||||    
T  16869027 gtgccatggaactttacattgcacacaaaataacctatgacaagaagagcattcacaacttgt 16868965  T

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