View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18873_low_10 (Length: 331)
Name: NF18873_low_10
Description: NF18873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18873_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 20 - 326
Target Start/End: Complemental strand, 24269251 - 24268945
Alignment:
| Q |
20 |
caggtgagccaacatttgtaactgtacgagtaacttcttgtacgaagtgtttccctagattaggcactgtgattgacggatagttaaaatctaacatgtt |
119 |
Q |
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| T |
24269251 |
caggtgagccaacatttgtaactgtacgagtaacttcttgtacgaagtgtttccctagattaggcactgtgattgaaggatagttaaaatctaacatgtt |
24269152 |
T |
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| Q |
120 |
gtaagactttggacaaatgtagggctttctagaaaacattttcatttgtgtttggttgtaaccatgtgcacaaaggaagttcaagtaatctacaatgttt |
219 |
Q |
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| T |
24269151 |
gtaagactttggacaaatgtagggctttctagaaaacattttcatttgtgtttggttgtaaccatgtgcacaaaggaagttcaagtaatctacaatgttt |
24269052 |
T |
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| Q |
220 |
agatcatagacaagtccagggtccatagcaagttctggttgtatgtgtcctgctccataaccaaatggagttgcatcttccttagattgatctttgattg |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24269051 |
agatcatagacaagtccagggtccatagcaagttctggttgtatgtgtcctgctccataaccaaatggagttgcatcttccttagattgatctttgattg |
24268952 |
T |
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| Q |
320 |
gtctgtg |
326 |
Q |
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||||||| |
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| T |
24268951 |
gtctgtg |
24268945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 260
Target Start/End: Complemental strand, 31203347 - 31203258
Alignment:
| Q |
171 |
ttggttgtaaccatgtgcacaaaggaagttcaagtaatctacaatgtttagatcatagacaagtccagggtccatagcaagttctggttg |
260 |
Q |
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| T |
31203347 |
ttggttgtatccataagcacataggaagttcaagtaatccttaatgcctagatcatatacaagtccaggatctattgcaaggtcaggttg |
31203258 |
T |
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