View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18873_low_12 (Length: 324)
Name: NF18873_low_12
Description: NF18873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18873_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 9 - 310
Target Start/End: Complemental strand, 8553984 - 8553683
Alignment:
| Q |
9 |
gaagaatatgaacaaggacaagaaaatggttcacctgaaattgaaaccctccctttattccctatgcatggtgaagacattcatggtggctattgtaacc |
108 |
Q |
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| T |
8553984 |
gaagaatatgatcaaggacaagaaaatggttcacctgaaattgaaaccctccctttattccctatgcatggtgaagacattcatggtggctattgtaacc |
8553885 |
T |
|
| Q |
109 |
tcaaatcaaattcatctaactatggtggttggtatcaagctgaagatgctggattcatgtatggttctcgtactacttccttggaacttagcctcaactc |
208 |
Q |
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| T |
8553884 |
tcaaatcaaattcatctaactatggtggttggtatcaagctgaagatgctggattcatgtatggttctcgtactacttccttggaacttagcctcaactc |
8553785 |
T |
|
| Q |
209 |
ttacggctgtaggtcaccagattatgctaattaaatttgctaagtttaaagatttgaagatgaagcttaatttatcttatatataatgatagtatgctac |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8553784 |
ttacggctgtaggtcaccagattatgctaattaaatttgctaagtttaaagatttgaagatgaagcttaatttatcttatatataataatagtatgctac |
8553685 |
T |
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| Q |
309 |
at |
310 |
Q |
| |
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|| |
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| T |
8553684 |
at |
8553683 |
T |
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